A fast and scalable phylogenetic tree viewer for microbiome data analysis
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Updated
Aug 4, 2024 - JavaScript
A fast and scalable phylogenetic tree viewer for microbiome data analysis
Sample search by metadata and features
Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples
Assign taxonomy with blast, can be used for qiime
Tools for phylogenetic data analysis including visualization and cluster-computing support.
Bash scripts for running QIIME 1.9 and a Snakemake workflow to automate it using singularity container images.
Bioinformatics pipeline for analysis of diatom sequenced data
Tools for phylogenetic data analysis including visualization and cluster-computing support.
Streamlit app forked for debugging purposes
A repository containing a demo microbiome workflow for R and Python
Tutorials on microbiome analysis using the Quantitative Insights Into Microbial Ecology (QIIME) platform
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