Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletions from NGS data.
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Apr 25, 2018 - C++
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quasispecies
Here are 7 public repositories matching this topic...
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Dec 2, 2022 - Java
Long-read haplotyping of small sequences with SNP-encoded de Bruijn graphs
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Sep 30, 2024 - Rust
Genetic extension to Conway's Game of Life with spatiotemporal and genetic analysis tools.
python c jupyter genetics numpy sdl2 quasispecies pattern-recognition artificial-life reaction-diffusion hashtable quadtree natural-computation genealogies connected-components pysdl2 evolutionary-game-theory conways-game-of-life open-ended-evolution activity-statistics
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Mar 18, 2022 - C
quasispecies reconstruction pipeline. Improves Accuracy of Pacbio long read viral RNA sequencing by 15%.
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Jun 30, 2017 - Python
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