rawreads

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A slurm based pipeline for RNA-seq analysis to execute on linux clusters. Feel free to connect to visualize your RNA-seq data on the clouds

slurm fastq rna-seq-analysis rna-seq-pipeline rawreads sortmerna

Bash scripts to run virulencefinder and serotypefinder in local settings on ecoli fasta and fastq.gz files.

bash ecoli assemblies rawreads virulencefinder serotypefinder

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