A set of tutorials for how to use all the tools in ML4GLand
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Updated
Sep 28, 2024 - Jupyter Notebook
A set of tutorials for how to use all the tools in ML4GLand
A Hugo-based deployment of biocomputeobject.org
Analyze the active regulatory region of DNA using FFNN and CNN
Repository documenting applications of the ML4GLand suite on published datasets
Motif representation and analysis toolkit in Python
Prediction of transcription factor binding based on DNA sequence
Deep learning model for non-coding regulatory variants
Deep Unfolded Convolutional Dictionary Learning for motif discovery.
A curated list of regulatory genomics papers and resources.
Datasets for benchmarking, testing and developing in EUGENe
squid repository for manuscript analysis
Threshold and p-value computations for Position Weight Matrices
Interpreting sequence-to-function machine learning models
lsgkm+gkmexplain with regression functionality. Builds off kundajelab/lsgkm (which has gkmexplain), which in turn builds off Dongwon-Lee/lsgkm (the original lsgkm repo)
Genomic sequence preprocessing toolkit
Data-driven design of context-specific regulatory elements
surrogate quantitative interpretability for deepnets
Elucidating the Utility of Genomic Elements with Neural Nets
🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
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