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14 public repositories
matching this topic...
CircAidMe is a tool designed to analyze data generated with CircAID-p-seq (immaginabiotech.com/product/circaid-p-seq/). CircAidMe was designed and implemented by Genexa (genexa.ch) in collaboration with Immagina Biotechnology.
Repository for my internship at the University College Cork in 2023.
Updated
May 24, 2023
Jupyter Notebook
Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.
Updated
Aug 25, 2024
Python
Snakemake pipeline for Ribo-Seq analysis
Updated
May 31, 2018
Python
Pipeline for small peptide discovery
Updated
Dec 20, 2022
Nextflow
RiboPlot includes programs to plot and output Ribo-Seq read counts from an alignment file (BAM format).
Updated
Aug 4, 2018
Python
Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs
Updated
Jan 27, 2023
Python
Results and scripts for benchmarking ribotricer for translating ORF detection from Ribo-seq data
Updated
Jan 8, 2021
Jupyter Notebook
Riborex: Fast and flexible identification of differential translation from Ribo-seq data
A comprehensive pipeline for Ribo-seq data analysis
Updated
Mar 18, 2024
Shell
An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data
Updated
Jul 2, 2024
Python
Updated
Mar 5, 2021
Python
Accurate estimation and robust modelling of translation dynamics at codon resolution
Updated
Jun 27, 2017
Python
Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
Updated
Aug 10, 2022
Python
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