SNP-free RNA editing Identification Toolkit
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Dec 26, 2024 - Python
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rna-editing
Here are 9 public repositories matching this topic...
Clair3-RNA - a long-read small variant caller for RNA sequencing data
rna-seq deep-learning nanopore rna variant-calling rna-editing rna-seq-pipeline ont long-read-sequencing pacbio-iso-seq
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Dec 17, 2024 - Python
Deepred-Mt is a novel method based on deep neural networks to predict C-to-U editing sites in angiosperm mitochondrial RNA.
genome autoencoder rna convolutional-neural-networks convolutional-autoencoder embedding rna-editing mitochondria posttranslational-modification rna-sequence angiosperms
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Aug 5, 2024 - Jupyter Notebook
An awesome Oxford Nanopore Pipeline for direct RNA-sequencing
bioinformatics quality-control pipeline singularity alternative-splicing-analysis transcriptomics oxford-nanopore rna-editing differential-expression-analysis snakemake-pipeline novel-transcripts rna-modifications direct-rna-sequencing known-transcripts polya-tail-length-estimation
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Feb 6, 2024 - Python
Trypanosome RNA Editing Alignment Tool
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Jan 16, 2024 - R
This repository contains the script written for PPR assembly automation with an OT2 system.
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May 19, 2021 - Jupyter Notebook
Mapping of RNAseq data on reference genome using Hisat2 for reduced mismatch penalties
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Dec 2, 2020 - Shell
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