nucleic acid folding

Analyse Nucleic Acids Structure and Simulations with baRNAba

A Go package for designing DNA.

Julia interface to ViennaRNA for RNA structure prediction and analysis

Julia interface to the RNAstructure program suite for RNA structure prediction and analysis

Python implementation of Nussinov RNA folding algorithm and recursive backtrack.

Julia interface to LinearFold RNA structure prediction programs: LinearFold, LinearPartition, LinearSampling, and LinearTurboFold

Nucleic acid secondary structure prediction and analysis

RAFFT: RNA structure and folding dynamics predictions using the fast Fourier transform

RNA design tool that utilizes reinforcement learning

🧬 Zuker: An RNA secondary structure prediction algorithm

A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.

RNA Pseudoknotted Secondary Structure Prediction Using Relaxed Hierarchical Folding

Coarse-grained molecular dynamics simulation with the Single-Interaction-Site RNA model

MFE method for predicting the psuedoknotted secondary structures of RNA sequences.

Faster algorithms for RNA-folding using the Four-Russians method

2 homeworks for "Algorithms in Structural Biology" Master course of Data Science and Information Technologies (DSIT)

RNA/DNA/PMO Pseudoknotted Secondary Structure Interaction Prediction Using Relaxed Hierarchical Folding

Tools For Computational Biology

RNA Pseudoknotted Secondary Structure Prediction Using Strict Hierarchical Folding