Xenosiderophores produced by gut commensal fungi or present in the diet promote Salmonella enterica serovar Typhimurium growth and gut colonization

next-gen pangenome graphs for predictive genomics

Salmonella typhi; analysis pipeline for Illumina reads

Bioinformatics tool for Salmonella WGS analysis

Detection, extraction, and cluster assignment of S. Infantis pESI

Fast assortment of Salmonella genomes into stable clusters using phylogenetic placement and kNN classifier

The AMRnet dashboard aims to make high-quality, robust and reliable genome-derived AMR surveillance data accessible to a wide audience

CGPS implementation of Genotyphi for assembled genomes.

Machine learning methods to predict the anti-microbial resistance of Salmonella.

Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.

Various scripts for efficient processing of 10k Salmonella genomes

SISTR (Salmonella In Silico Typing Resource) command-line tool