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Dec 8, 2022 - Python
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sc-rna-seq-analysis
Here are 6 public repositories matching this topic...
This project (https://doi.org/10.1145/3512452.3512455) investigates and summarizes the superiority and limitations of different dimensionality reduction schemes as well as classification methods in specific single-cell RNA sequencing (scRNA-seq) data sets.
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Feb 12, 2022 - Jupyter Notebook
Single-cell RNA data analysis using R (Seurat) , Python (Scanpy), and Julia.
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May 16, 2024 - Jupyter Notebook
Implementing GANs in the sc-RNA-Seq pipeline
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Sep 10, 2021 - Python
Recreation and enrichment of the gastric (GC) cancer single-cell RNA-seq (scRNA-seq) data analysis pipeline described in the "Comprehensive analysis of metastatic gastric cancer tumour cells using single‑cell RNA‑seq" by Wang B. et. al, using the raw counts matrix they provide.
python machine-learning bioinformatics clustering pca tsne umap spectral-clustering single-cell-rna-seq louvain-algorithm ward-linkage sc-rna-seq go-annotation scanpy gmm-clustering sc-rna-seq-analysis average-linkage leiden-algorithm gastric-cancer marker-gene-identification
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Nov 25, 2024 - Jupyter Notebook
A collection of independent research projects involving various methods involving next generation sequencing (NGS) data analysis, including scRNA-seq, RNA-seq and scATAC-seq data.
python bioinformatics r computational-biology bioconductor cancer-research bioinformatics-analysis sc-rna-seq-analysis
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Dec 25, 2024 - Jupyter Notebook
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