📷 Computer-Vision Demos

DAQmx Examples using MATLAB

Measure PSF FWHM along different axes

Serial-section automated anatomy extension for ScanImage

Simple web-based scanner interface for Linux (SANE)

Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).

Network driver for Brother scanner devices. Daemon for press-to-scan functionality.

Scan to PDF (scan2pdf) - Scan documents directly to PDF files from the command line. Especially useful to batch-scan large volumes of documents.

MATLAB tools for running imaging experiments with ScanImage

Kind of like CUPS but it's for scanning, not printing. Preform a scan on your flatbed scanner from the web browser.

utility functions for analyzing (fly) calcium imaging data

Customized bash script for brscan-skey

read and analyse 2 photon images from ScanImage

Perform alternating beam scanning with Scanimage (public release version SI55R1).

Perform registration of 3D imaging data and localization of spots (synapses/boutons) in semi-automatic mode (with graphical user interface).

Loads tif format image data recorded in ScanImage and interpolates between that and an application specific log file (.txt)

Matlab TIFF Stack Reader for ScanImage 5 scans (including multiROI).

A HTTP wrapper for scanimage

code for 2p imaging experiments that syncs I/O and hardware triggers to neural data acquisition (pupil tracking camera, stimulus presentation, etc.)

Tools for recording and analyzing for Ca data