📷 Computer-Vision Demos

read and analyse 2 photon images from ScanImage

Perform alternating beam scanning with Scanimage (public release version SI55R1).

Matlab TIFF Stack Reader for ScanImage 5 scans (including multiROI).

Perform registration of 3D imaging data and localization of spots (synapses/boutons) in semi-automatic mode (with graphical user interface).

code for 2p imaging experiments that syncs I/O and hardware triggers to neural data acquisition (pupil tracking camera, stimulus presentation, etc.)

Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).

A HTTP wrapper for scanimage

Scan Image Linux GUI HP Simple Scans

Customized bash script for brscan-skey

Loads tif format image data recorded in ScanImage and interpolates between that and an application specific log file (.txt)

Simple web-based scanner interface for Linux (SANE)

DAQmx Examples using MATLAB

Scan to PDF (scan2pdf) - Scan documents directly to PDF files from the command line. Especially useful to batch-scan large volumes of documents.

Network driver for Brother scanner devices. Daemon for press-to-scan functionality.

MATLAB tools for running imaging experiments with ScanImage

Measure PSF FWHM along different axes

Serial-section automated anatomy extension for ScanImage

utility functions for analyzing (fly) calcium imaging data

Kind of like CUPS but it's for scanning, not printing. Preform a scan on your flatbed scanner from the web browser.