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Nov 3, 2019
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sciworkflows
Here are 12 public repositories matching this topic...
A Snakemake workflow for variant calling with DeepVariant, and optionally joint variant calling using GLnexus.
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Jun 30, 2021 - Python
This Snakemake pipeline implements the GATK best-practices workflow
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Jun 8, 2023 - Python
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
workflow
bioinformatics
gwas
snakemake
pipeline
genomics
ngs
conda
bioinformatics-pipeline
structural-variation
gwas-pipeline
bioinformatics-tool
gwas-tools
kmers
sciworkflows
association-mapping
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Apr 18, 2024 - Python
RNA-seq workflow using STAR and DESeq2
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Aug 1, 2024 - Python
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
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Aug 10, 2024 - Common Workflow Language
Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake
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Oct 24, 2024 - Python
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
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Nov 12, 2024 - Python
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
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Nov 5, 2024 - Python
Snakemake pipeline to construct species phylogenies using BUSCOs
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Nov 9, 2024 - Python
Common Workflow Language reference implementation
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Nov 12, 2024 - Python
🦀 SciWIn Client: Reproducible computational Workflows made easy!
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Nov 12, 2024 - Rust
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