Graph-linked unified embedding for single-cell multi-omics data integration

Context specific and dynamic gene regulatory network reconstruction and analysis

R package to visualize gene expression data based on weighted kernel density estimation

Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis

𝒫robabilistic modeling of RNA velocity ⬱

An unsupervised approach for the integrative analysis of single-cell multi-omics data

Python package implementing our method MatchCLOT for multimodal single-cell data integration

scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis

R and MATLAB scripts for MAGICAL

MSc Project - Integrative Analysis of Single-Nucleus RNA-Seq and ATAC-Seq of C9orf72 Knockout Mouse Brain

bioinformatics pipeline for single-nucleus methylation & chromatin conformation capture assay (sn-m3C-seq)

Luo Lab snmCT-seq bioinformatics pipeline for joint single-nucleus methylation & transcriptome profiles.

Containerized workflow for single cell detection of loss of Y chromosome and other mosaic chromosomal alterations in chronic kidney disease

Multimodal profiling reveals site-specific adaptation and tissue residency hallmarks of γδ T cells across organs in mice.

Workflow to identify functional cis-regulatory regions for each annotated cell type