Please consider using/contributing to https://github.com/nf-core/scdownstream
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Jun 13, 2024 - Nextflow
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single-nuclei-rna-sequencing
Here are 11 public repositories matching this topic...
A comparison of data integration methods for single-cell RNA sequencing of cancer samples
bioinformatics cancer cancer-genomics data-integration single-cell single-cell-rna-seq batch-correction single-nuclei-rna-sequencing
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Aug 19, 2021 - Jupyter Notebook
This is a repository for the publication "Spatially-Resolved, Single Cell Transcriptome Mapping of the Arbuscular Mycorrhizal Symbiosis" in which authors applied single-nuclei RNA-seq and spatial RNA-seq to the symbiosis between Medicago truncatula and Rhizophagus irregularis.
transcriptomics rna-seq-analysis spatial-data-analysis symbiosis single-nuclei-rna-sequencing mycorrhizal-fungi
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Mar 22, 2024 - Jupyter Notebook
Coupling of oxytocin and cholecystokinin pathways in the hypothalamus is required for gut-to-brain homeostatic feeding control
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Oct 8, 2024 - Jupyter Notebook
Rmarkdown scripts for adult human postmortem SN & Cortex cell atlas project.
magma parkinsons-disease 10xgenomics ldscore neurodegenerative-diseases cell-atlas single-nuclei-rna-sequencing
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Sep 3, 2020 - R
Retinal ganglion cells regeneration in 2 days post optic nerve crush retina | Lydia Tai | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
python bioinformatics r sequencing velocity epigenetics rna transcriptome single-cell pathway-analysis gsea regeneration seurat rna-velocity single-nuclei-rna-sequencing single-nuclei cellchat single-cell-rna-sequencing retinal-ganglion-cell optic-nerve-crush
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Jun 24, 2024 - R
Unveiling adipose populations linked to metabolic health in obesity
adipose-tissue obesity bulk-rna-seq insulin-resistance single-nuclei-rna-sequencing metabolic-health
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Dec 18, 2024 - R
Framework for investigation of cell-type-specific regulation and expression in rare disease
mendelian-genetics network-biology translational-research rare-disease single-nuclei-rna-sequencing genomics-analysis
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Dec 5, 2023 - R
R scripts used to analyze single-nucleus RNA-seq data generated from in vitro differentiated pancreatic organoids, described in Huang, L. et al. 2021 (in press).
biology transcriptomics single-cell single-cell-rna-seq pancreas seurat single-nuclei-rna-sequencing multi-seq
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Mar 17, 2021 - R
Single Nuclei RNA Sequencing analysis of MND muscle cultures for the paper "Impaired signaling for neuromuscular synaptic maintenance is a feature of Motor Neuron Disease" by Ding et al, published in Acta Neuropathologica Communications.
r research cell scrna-seq muscle single-cell research-paper singlecell mnd single-nuclei-rna-sequencing single-nuclei
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Jun 6, 2022 - R
code for "Drosophila PDGF/VEGF signaling from muscles to hepatocyte-like cells protects against obesity"
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Nov 6, 2020
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