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May 6, 2024 - Python
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single-nucleotide-variation
Here are 8 public repositories matching this topic...
Single cell Nanopore sequencing data for Genotype and Phenotype
gene-expression
single-cell
isoforms
demultiplexing
cell-barcode
rna-seq-pipeline
single-nucleotide-variation
long-read-sequencing
nanopore-analysis-pipeline
umi-curation
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Sep 5, 2024 - Python
A collection of software to work with genomic variants
vcf
variants
snv
variant-filtration
variant-analysis
snvs
trio
de-novo-mutation
single-nucleotide-variation
de-novo-mutations
compound-heterozygous
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Sep 11, 2024 - Python
Compares large numbers of bacterial sequences
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Jun 1, 2018 - Python
Bacterial relatedness server, supporting sequence clustering & mixture detection
rest-server
clustering-algorithm
rest-client
relatedness
bacterial-genomes
single-nucleotide-variation
mixed-infection
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Nov 23, 2021 - Python
SCarborSNV is an efficient algorithm for phylogeny aware genotyping of single cell genomes, using dynamic programming and neighbor joining.
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Sep 1, 2019 - C
Predicting true low-VAF SNVs in HPV using triplicate NGS samples and machine learning
machine-learning
vcf
cancer-genomics
variant-calling
snv
vcf-files
ngs-analysis
hpv
ion-torrent
variant-call-format
single-nucleotide-variation
extreme-gradient-boosting
intrahost-genetic-diversity
intrahost
vcfgenie
human-papillomavirus
isnv
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Mar 12, 2024 - Jupyter Notebook
Code for 4th year honours thesis project at the University of Waterloo.
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Nov 1, 2024 - Shell
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