A minimal Snakemake pipeline.
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Updated
Sep 2, 2019 - Python
A minimal Snakemake pipeline.
A snakemake workflow for the OrthoEvol python package.
A Snakemake pipeline developed to quantify isoforms expression levels in large RNA-seq datasets and find poly-A sites
STAR + edgeR/DESeq2/limma-voom + GSEA RNA-seq gene expression analysis workflow
Bismark-MethylDackel DNA methylation quantification pipeline in snakemake.
My final thesis project work from my Biomedical Genomics MSc undertaken at NUIG, 2021. Includes Nextflow, Snakemake, Bash, Python and R scripts.
Statistical inference of recent positive selection using IBD segments
Snakemake pipelines for nanopore sequencing data archiving and processing
Snakemake profile for running jobs on an LSF cluster
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