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splicing-quantification

Here are 12 public repositories matching this topic...

nuno-agostinho / vast-tools-docker

Docker to run VAST-TOOLS for splicing quantification and analysis

docker alternative-splicing splicing-quantification vast-tools

Updated Jan 14, 2021
Dockerfile

sivkri / splicing-events-calculation

Calculate five major splicing events using rMATS followed by annotation

splicing-quantification splicing-event splicing-visualization splicing-analyses splicing-annotation splicing-event-filter splicing-detection splicing

Updated Nov 5, 2021
Jupyter Notebook

nuno-agostinho / whippet-docker

Docker to run Whippet for splicing quantification and analysis

docker alternative-splicing splicing-quantification whippet

Updated Jul 18, 2017

nuno-agostinho / suppa-docker

Docker to run SUPPA for splicing quantification and analysis

docker alternative-splicing splicing-quantification suppa

Updated Jul 18, 2017
Python

nuno-agostinho / miso-docker

Docker to run MISO for splicing quantification and analysis

docker alternative-splicing splicing-quantification miso

Updated Jul 18, 2017
Python

vrmelo / SPLICE-q

SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.

rna-seq python3 splicing-quantification splicing-analyses splicing

Updated Sep 15, 2023
Python

nuno-agostinho / rmats-docker

Docker to run rMATS for splicing quantification and analysis

docker alternative-splicing splicing-quantification rmats

Updated Mar 21, 2019
Python

guigolab / ipsa-nf

Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow

bioinformatics rna-seq pipeline genomics nextflow ngs splicing-quantification splicing-event crg guigo splice-junctions splicing-analyses

Updated Jul 19, 2019
Perl

noush-joglekar / scisorseqr

scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two conditions

splicing-quantification differential-analysis single-cell-rna-seq long-read-sequencing

Updated Mar 9, 2023
R

nuno-agostinho / psichomics

Interactive R package to quantify, analyse and visualise alternative splicing

tcga gene-expression bioconductor alternative-splicing gtex survival splicing-quantification data-analyses differential-splicing-analysis rna-seq-data sra differential-gene-expression vast-tools recount2

Updated Nov 4, 2024
R

nsalomonis / altanalyze

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

python bam-files clustering graphical-interface pagerank bioinformatics-pipeline alternative-splicing command-line-tool splicing-quantification network-analysis pathway-analysis rna-seq-data scrna-seq-data cell-cycle cell-type-classification splicing-visualization fastq-anaysis single-cell-splicing marker-gene-analysis louvain-community-detection

Updated Jul 7, 2022
Python

comprna / SUPPA

SUPPA: Fast quantification of splicing and differential splicing

splicing-quantification differential-splicing-analysis psi-calculation transcript-isoform psi-values clustered-events inclusion-level

Updated Jun 19, 2024
Python

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