MAMnet uses a deep learning network to call genetic variants from third generation DNA sequencing data.
DupFinder: A tools to detect the duplicated genes using Illumina and Nanopore sequencing data
population structural variant calling with smoove
A snakemake pipeline to call structure variants from ONT data
Scripts used to compare SVs detected from long read and long read assembly
Garvan KCCG Student Summer Research Project #1 Benchmarking structural variant callers on whole genome sequencing data
A combination of optical genome mapping with Bionano and whole genome sequencing short-read data. This pipeline was created to help integrate structural variant calling from these two technologies.
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