substitution-rate

Here are 2 public repositories matching this topic...

chasewnelson / SNPGenie

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

evolution perl next-generation-sequencing vcf population-genetics dnds-estimation molecular-evolution nucleotide fasta-sequences vcf-files diversity-measurement sequence-analysis dnds natural-selection snp-report nucleotide-diversity evolutionary-parameters substitution-rate nei-gojobori

Updated Aug 21, 2023
Perl

VIB-PSB / ksrates

Star

ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-ortholog Ks distributions.

evolution substitution-rate wgd wgm whole-genome-duplication ks-distributions

Updated Jun 28, 2024
Python

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