MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!

Post-analysis of immune repertoire sequencing data

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.

⚙️ Matching T-cell repertoire against a database of TCR antigen specificities

HLA-II ligand predictor.

T-cell motility simulator

Python SDK for Immune Epitope Database (IEDB) Analysis Tools API

A parser for immune receptor gene data, mainly IMGT references

Bayesian models used in CD56bright natural killer cells preferentially kill proliferating CD4+ T cells

This neural-network can predict the effector/memory T cell (T lymphocyte) subset of single cells based on flow cytometry data with 99,22% accuracy.

TCR Enrichment Analysis (TEA) Webtool