Nanopore sequence read simulator

A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq

Mirror of Bioconductor's CAGEr package repository

⏳ Online graphical interface to explore age-related gene expression alterations in 49 GTEx human tissues

Evolutionary Transcriptomics with R

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data

R语言notebook代码，绘制生信九项限图（转录组和代谢）

GET_HOMOLOGUES: a versatile software package for pan-genome analysis

Code for MERFISH analysis

Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibility and cis-regulatory chromatin contacts.

Select best protein codeing genes from models Generated from MAKER2, Cufflinks and any de novo assembling programs. Previously called MCOT, with this publication (http://www.sciencedirect.com/science/article/pii/S0965174815000144).

Retinal ganglion cells regeneration in 2 days post optic nerve crush retina | Lydia Tai | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Merge transcriptome read-to-genome alignments into non-redundant transcript models

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

Analysis of single and comparative transcriptomes

A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes

An application for exploring and visualizing differential gene expression data created with DESeq2

A Python library to visualize and analyze long-read transcriptomes