tools for working with genome variation graphs

Modular Multi-scale Integrated Genome Graph Browser

Parallel Sequence to Graph Alignment

An accurate aligner of long reads to a variation graph, based on co-linear chaining

Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions

A web-based, interactive pangenome visualization tool

Linear-time, low-memory construction of variation graphs

SV genotyper for long reads with a variation graph

Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]

A Go library for working with Graphical Fragment Assembly format

Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.

Handlegraph RDF writers in java for working with variation graph genome data.

Analysis of shared parts of a pangenome

This is experiment to measure performance in vg recalibrate, testing different models.

Library to parse, edit and handle in memory GFA graphs

Notes upon pangenome graphs construction

A tool for modelling graphs of genetic variation.