The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight inputs, segmented masks, skeletons of NGV morphologies and volumes.

A project to create synthetic vascular networks utilising L-Systems.

#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720

Public-facing repository for SLAVV software

Software to analyse the topology of vascular networks.

A rudimentary SOFA application that uses an open-source framework to target real-time robotics simulation, with an emphasis on medical schemas.

[MICCAI 2024] TrIND: Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields

Official Code for "Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields"

Collide vasculature and neurons for fun and profit (?)

Network flow model of the zebrafish trunk vasculature (Control and Wasp Mutant data included) as part of the study presented by Rosa et. al. 2022 (https://journals.biologists.com/dev/article/149/3/dev200195/274169)

Code for "Vasculature segmentation in 3D hierarchical phase-contrast tomography images of human kidneys"