Learning the Variant Call Format
-
Updated
Mar 25, 2024 - Perl
Learning the Variant Call Format
A python parser to simplify and build the VCF (Variant Call Format).
tips and tricks in genome-wide association studies - a tutorial
Scripts in R for Landscape Genomics Analyses v.2
Scripts in R for analyses of Isolation by Resistance (IBR) - PART 3 in LANDSCAPE GENOMICS PIPELINE
Scripts in R for analyses of Isolation by Distance (IBD) - PART 2 in LANDSCAPE GENOMICS PIPELINE
Repository for Blog Article on Parsing with cyvcf2. Article ==>
summarize and visualize the genotypes categories per sample in a VCF file
Example files for Benin NGS capacity building project
bcftools singularity container
Variant annotation and filtration server ALAPY Genome Explorer
Simple tool to merge VCF contacts.
VCF: Variant Call Format files are difficult to understand at first, I already had to dive into them in order to learn how to edit them, so you can use my scripts. Some of these functions already exist in vcftools, but it seems it stopped being updated. so you can use these scripts to do various tasks with them
Custom command line utility tools to manipulate vcf files
Add a description, image, and links to the vcftools topic page so that developers can more easily learn about it.
To associate your repository with the vcftools topic, visit your repo's landing page and select "manage topics."