Bump Numpy version and fix complex type

.github/workflows/tests.yaml

@@ -14,15 +14,18 @@ jobs:
     strategy:
         matrix:
             os: ["ubuntu-latest", "windows-latest"]
+            python-version: [ "3.8", "3.9", "3.10", "3.11", "3.12" ]
     steps:
       - uses: actions/checkout@v2
-      - uses: conda-incubator/setup-miniconda@v2
+      - name: Set up Miniconda ${{ matrix.python-version }}
+        uses: conda-incubator/setup-miniconda@v2
         with:
           activate-environment: test
           channels: conda-forge,defaults
           environment-file: environment.yml
-          python-version: 3.8
+          python-version: ${{ matrix.python-version }}
           auto-activate-base: false
+          cache-dependencies: true
       - shell: bash -l {0}
         run: |
           conda info
@@ -44,6 +47,7 @@ jobs:
             conda install pytest
             py.test . --cov-report=xml --cov=traja -vvv
       - name: Upload coverage to Codecov
+        if: ${{ matrix.python-version }} == '3.8'
         uses: codecov/codecov-action@v1
         with:
           token: ${{ secrets.CODECOV_TOKEN }}

.gitignore

@@ -127,3 +127,4 @@ docs/source/reference
 
 # Model parameter files
 *.pt
+.python-version

requirements.txt

@@ -1,11 +1,11 @@
 pandas>=1.2.0
-numpy==1.18.5
-matplotlib
-shapely
-scipy>=1.4.1
-fastdtw
-networkx
-seaborn
-torch
-statsmodels
-scikit-learn
+numpy>=1.22.0
+matplotlib>=3.3.3
+shapely>=1.7.1
+scipy>=1.2.1
+fastdtw>=0.3.0
+networkx>=2.0
+seaborn>=0.11.0
+torch>=1.7.0
+statsmodels>=0.12.0
+scikit-learn>=0.24.0

requirements/docs.txt

@@ -1,17 +1,17 @@
 pandas>=1.2.0
 numpy==1.18.5
-matplotlib
-shapely
-scipy
-scikit-learn
-sphinx
-sphinx-gallery
-sphinx_rtd_theme
-fastdtw
-networkx
-seaborn
-torch
-pytest
-pytest-cov
-codecov
-ipython
+matplotlib>=3.3.3
+shapely>=1.7.1
+scipy>=1.2.1
+scikit-learn>=0.24.0
+sphinx>=3.4.3
+sphinx-gallery>=0.9.0
+sphinx_rtd_theme>=0.5.1
+fastdtw>=0.3.0
+networkx>=2.0
+seaborn>=0.11.0
+torch>=1.7.0
+pytest>=6.2.2
+pytest-cov>=2.11.1
+codecov>=2.1.11
+ipython>=7.20.0

requirements/extra.txt

@@ -1,16 +1,9 @@
 # extended list of package dependencies to reach full functionality
 
-pytest
-h5py
-ipython
-pre-commit
-shapely
-scipy>=1.4.1
-scikit-learn
-fastdtw
-networkx
-seaborn
-torch
-h5py
-numba>=0.50.0
+pytest>=6.2.2
+h5py>=2.10.0
+ipython>=7.19.0
+pre-commit>=2.9.3
+h5py>=2.10.0
+numba>=0.50.1
 pyDOE2>=1.3.0

traja/tests/test_trajectory.py

@@ -1,7 +1,7 @@
 import numpy as np
 import numpy.testing as npt
 import pytest
-from pandas.util.testing import assert_series_equal
+from pandas.testing import assert_series_equal
 
 import traja
 

traja/trajectory.py

@@ -668,7 +668,7 @@ def generate(
 
     if random:
         # Accumulate angular errors
-        coords = np.zeros(n, dtype=np.complex)
+        coords = np.zeros(n, dtype=complex)
         angle = 0
         for i in range(n - 1):
             angle += angular_errors[i]