Upgrade actions infrastructure

tskit-dev · Jun 24, 2024 · 0fe5926 · 0fe5926
1 parent dd693ed
commit 0fe5926
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Showing 6 changed files with 51 additions and 50 deletions.
diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
@@ -7,7 +7,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout
-        uses: actions/checkout@v2
+        uses: actions/checkout@v4
       - name: Install dependencies and set path
         run: |
             sudo apt-get update

diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
@@ -11,7 +11,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Cancel Previous Runs
-        uses: styfle/cancel-workflow-action@0.6.0
+        uses: styfle/cancel-workflow-action@0.12.1
         with:
           access_token: ${{ github.token }}
       - uses: actions/checkout@v3
@@ -27,21 +27,21 @@ jobs:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        python: [ 3.8, 3.11 ]
+        python: [ 3.9, 3.12 ]
         os:  [ macos-latest, ubuntu-latest, windows-latest ]
     defaults:
       run:
         shell: bash
     steps:
       - name: Cancel Previous Runs
-        uses: styfle/cancel-workflow-action@0.6.0
+        uses: styfle/cancel-workflow-action@0.12.1
         with:
           access_token: ${{ github.token }}
 
       - name: Checkout
-        uses: actions/checkout@v2
+        uses: actions/checkout@v4
 
-      - uses: actions/setup-python@v2
+      - uses: actions/setup-python@v5
         with:
           python-version: ${{matrix.python}}
 

diff --git a/.github/workflows/wheels.yml b/.github/workflows/wheels.yml
@@ -15,11 +15,11 @@ jobs:
     runs-on: windows-latest
     strategy:
       matrix:
-        python: [3.8, 3.9, "3.10", 3.11]
+        python: [3.9, "3.10", 3.11, 3.12]
         wordsize: [64]
     steps:
       - name: Checkout
-        uses: actions/checkout@v2
+        uses: actions/checkout@v4
       - name: Build wheel
         env:
           PYTHON: "py -${{ matrix.python }}-${{ matrix.wordsize }}"
@@ -49,7 +49,7 @@ jobs:
           rm -rf python/kastore python/*.pyd
           ${PYTHON} -m pytest -v python
       - name: Upload Wheels
-        uses: actions/upload-artifact@v2
+        uses: actions/upload-artifact@v4
         with:
           name: win-wheel-${{ matrix.python }}-${{ matrix.wordsize }}
           path: python/dist
@@ -58,12 +58,12 @@ jobs:
     runs-on: macos-latest
     strategy:
       matrix:
-        python: [3.8, 3.9, "3.10", 3.11]
+        python: [3.9, "3.10", 3.11, 3.12]
     steps:
       - name: Checkout
-        uses: actions/checkout@v2
+        uses: actions/checkout@v4
       - name: Set up Python ${{ matrix.python }}
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python }}
       - name: Build Wheel
@@ -82,7 +82,7 @@ jobs:
           rm -rf python/kastore python/*.so
           python -m pytest -v python
       - name: Upload Wheels
-        uses: actions/upload-artifact@v2
+        uses: actions/upload-artifact@v4
         with:
           name: osx-wheel-${{ matrix.python }}
           path: python/dist
@@ -91,12 +91,12 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout
-        uses: actions/checkout@v2
+        uses: actions/checkout@v4
 
-      - name: Set up Python 3.8
-        uses: actions/setup-python@v2
+      - name: Set up Python 3.9
+        uses: actions/setup-python@v4
         with:
-          python-version: 3.8
+          python-version: 3.9
 
       - name: Build sdist
         shell: bash
@@ -106,7 +106,7 @@ jobs:
           python setup.py sdist
 
       - name: Upload sdist
-        uses: actions/upload-artifact@v2
+        uses: actions/upload-artifact@v4
         with:
           name: sdist
           path: python/dist
@@ -116,12 +116,12 @@ jobs:
         run: |
           docker run --rm -v `pwd`:/project -w /project quay.io/pypa/manylinux2014_x86_64 bash docker/buildwheel.sh
 
-      - name: Set up Python 3.11
-        uses: actions/setup-python@v2
+      - name: Set up Python 3.12
+        uses: actions/setup-python@v5
         with:
-          python-version: 3.11
+          python-version: 3.12
 
-      - name: Run tests (3.11)
+      - name: Run tests (3.12)
         run: |
           python -VV
           # We install in this odd way to make sure we get both deps and a local kastore
@@ -132,12 +132,12 @@ jobs:
           pip install -r python/requirements/CI/tests/requirements.txt
           python -m pytest -v python
 
-      - name: Set up Python 3.10
-        uses: actions/setup-python@v2
+      - name: Set up Python 3.12
+        uses: actions/setup-python@v5
         with:
-          python-version: "3.10"
+          python-version: 3.12
 
-      - name: Run tests (3.10)
+      - name: Run tests (3.11)
         run: |
           python -VV
           # We install in this odd way to make sure we get both deps and a local kastore
@@ -148,12 +148,12 @@ jobs:
           pip install -r python/requirements/CI/tests/requirements.txt
           python -m pytest -v python
 
-      - name: Set up Python 3.9
-        uses: actions/setup-python@v2
+      - name: Set up Python 3.10
+        uses: actions/setup-python@v5
         with:
-          python-version: 3.9
+          python-version: "3.10"
 
-      - name: Run tests (3.9)
+      - name: Run tests (3.10)
         run: |
           python -VV
           # We install in this odd way to make sure we get both deps and a local kastore
@@ -164,12 +164,12 @@ jobs:
           pip install -r python/requirements/CI/tests/requirements.txt
           python -m pytest -v python
 
-      - name: Set up Python 3.8
-        uses: actions/setup-python@v2
+      - name: Set up Python 3.9
+        uses: actions/setup-python@v5
         with:
-          python-version: 3.8
+          python-version: 3.9
 
-      - name: Run tests (3.8)
+      - name: Run tests (3.9)
         run: |
           python -VV
           # We install in this odd way to make sure we get both deps and a local kastore
@@ -181,7 +181,7 @@ jobs:
           python -m pytest -v python
 
       - name: Upload Wheels
-        uses: actions/upload-artifact@v2
+        uses: actions/upload-artifact@v4
         with:
           name: linux-wheels
           path: python/dist/wheelhouse
@@ -192,7 +192,7 @@ jobs:
     needs: ['windows', 'OSX', 'manylinux']
     steps:
       - name: Download all
-        uses: actions/download-artifact@v2
+        uses: actions/download-artifact@v4
       - name: Move to dist
         run: |
           mkdir dist

diff --git a/.mergify.yml b/.mergify.yml
@@ -4,12 +4,12 @@ queue_rules:
       - "#approved-reviews-by>=1"
       - "#changes-requested-reviews-by=0"
       - status-success=Lint
-      - status-success=Python (3.8, macos-latest)
-      - status-success=Python (3.11, macos-latest)
-      - status-success=Python (3.8, ubuntu-latest)
-      - status-success=Python (3.11, ubuntu-latest)
-      - status-success=Python (3.8, windows-latest)
-      - status-success=Python (3.11, windows-latest)
+      - status-success=Python (3.9, macos-latest)
+      - status-success=Python (3.12, macos-latest)
+      - status-success=Python (3.9, ubuntu-latest)
+      - status-success=Python (3.12, ubuntu-latest)
+      - status-success=Python (3.9, windows-latest)
+      - status-success=Python (3.12, windows-latest)
       - "status-success=ci/circleci: build"
 
 pull_request_rules:
@@ -21,12 +21,12 @@ pull_request_rules:
       - base=main
       - label=AUTOMERGE-REQUESTED
       - status-success=Lint
-      - status-success=Python (3.8, macos-latest)
-      - status-success=Python (3.11, macos-latest)
-      - status-success=Python (3.8, ubuntu-latest)
-      - status-success=Python (3.11, ubuntu-latest)
-      - status-success=Python (3.8, windows-latest)
-      - status-success=Python (3.11, windows-latest)
+      - status-success=Python (3.9, macos-latest)
+      - status-success=Python (3.12, macos-latest)
+      - status-success=Python (3.9, ubuntu-latest)
+      - status-success=Python (3.12, ubuntu-latest)
+      - status-success=Python (3.9, windows-latest)
+      - status-success=Python (3.12, windows-latest)
       - "status-success=ci/circleci: build"
     actions:
       queue:

diff --git a/python/requirements/CI/tests/requirements.txt b/python/requirements/CI/tests/requirements.txt
@@ -5,3 +5,4 @@ pytest
 pytest-cov
 numpy
 mock
+setuptools
diff --git a/python/setup.cfg b/python/setup.cfg
@@ -19,10 +19,10 @@ classifiers =
         Topic :: Scientific/Engineering :: Bio-Informatics
         License :: OSI Approved :: MIT License
         Programming Language :: Python :: 3
-        Programming Language :: Python :: 3.8
         Programming Language :: Python :: 3.9
         Programming Language :: Python :: 3.10
         Programming Language :: Python :: 3.11
+        Programming Language :: Python :: 3.12
         Programming Language :: Python :: 3 :: Only
 keywords =
     binary store
@@ -35,7 +35,7 @@ platforms =
 
 [options]
 packages = kastore
-python_requires = >=3.8
+python_requires = >=3.9
 include_package_data = True
 install_requires =
     numpy>=1.7