From 24e7f54505f9dace5e9adb78c144509892dd289a Mon Sep 17 00:00:00 2001 From: Jerome Kelleher Date: Thu, 5 Dec 2019 15:17:56 +0000 Subject: [PATCH] Update CHANGELOG for 0.7.4. --- CHANGELOG.rst | 30 +++++++++++++++++++++++++++++- 1 file changed, 29 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.rst b/CHANGELOG.rst index d1be46f83..e75a41849 100644 --- a/CHANGELOG.rst +++ b/CHANGELOG.rst @@ -1,12 +1,40 @@ ******************** -[0.7.4] - XXXXXXXXXX +[0.7.4] - 2019-12-05 ******************** +**Bug fixes**: + +- Fix error in mspms output of tree spans. In previous versions, the length of + genome spanned by trees in the newick output was incorrect in certain situations + (specifically, when "invisible" recombinations are present so that two or more + identical trees are printed out). Thanks to :user:`fbaumdicker` for spotting + the problem. (:user:`jeromekelleher`, :pr:`837`, :issue:`836`) + +- Fix assertion tripped when we have very low recombination rates in the DTWF + model. Thanks to :user:`terhorst` for the bug report. + (:user:`jeromekelleher`, :pr:`833`, :issue:`831`). + +- Fix bug in memory allocation when simulating mutations on a tree sequence + that already contains many mutations. Thanks to :user:`santaci` for the + bug report. (:user:`jeromekelleher`, :user:`petrelharp`, :pr:`838`, + :issue:`806`) + **New features**: +- Add the new Census event, which allows us to place nodes on all extant + branches at a given time (:user:`gtsambos` :pr:`799`). + - Improved error reporting for input parameters, in particular demographic events (:pr:`829`). +**Documentation**: + +- Improved container documentation (:user:`agladstein`, :pr:`822`, :issue:`809`). + +- Improved developer docs for macs (:user:`gtsambos`, :user:`molpopgen`, :pr:`805`). + +- Clarify meaning of migration matrix (:user:`petrelharp`, :pr:`830`). + ******************** [0.7.3] - 2019-08-03 ********************