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Add mixture-of-gammas global prior, updated by EM #349

Merged
merged 4 commits into from
Jan 6, 2024

Commits on Jan 5, 2024

  1. Mixture prior works

    More streamlined numerical checks
    
    Initialize gamma mixture from conditional coalescent prior
    
    Add pdf
    
    Update mixture.py to use natural parameterization
    
    WIP
    
    Moved fully into numba
    
    Cleanup
    
    Cleanup
    
    More debugging
    
    WIP
    
    Working
    
    wording
    
    Add missing constant to loglikelihood
    
    Skip prior update completely instead of components
    
    Skip prior update completely instead of components
    
    Remove verbose; use logweights in conditional posterior
    
    Move mixture initialization to function
    
    Docstrings and CLI
    
    Remove some debugging inserts
    
    Remove preemptive reference
    
    Fix tests
    nspope committed Jan 5, 2024
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Commits on Jan 6, 2024

  1. Minor fixes

    nspope committed Jan 6, 2024
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