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NEVER MERGE: protype for modular/streaming simplifier #443

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NEVER MERGE: protype for modular/streaming simplifier #443

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Commits on Dec 23, 2022

  1. Bump version to 0.13.0-alpha.0

    @molpopgen
    molpopgen committed Dec 23, 2022
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Commits on Jan 11, 2023

  1. feat: Use Bookmark in haploid_wright_fisher example. (#441)

    @molpopgen
    molpopgen authored Jan 11, 2023
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  2. feat: Implement efficient edge buffering 

    * cargo feature edgebuffer
    @molpopgen
    molpopgen committed Jan 11, 2023
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  3. commenting out code == tests still pass

    @molpopgen
    molpopgen committed Jan 11, 2023
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Commits on Jan 12, 2023

  1. note re: perf

    @molpopgen
    molpopgen committed Jan 12, 2023
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Commits on Jan 13, 2023

  1. Add prototypes for stuff we will need.

    @molpopgen
    molpopgen committed Jan 13, 2023
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  2. init the simplifier

    @molpopgen
    molpopgen committed Jan 13, 2023
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  3. move comment

    @molpopgen
    molpopgen committed Jan 13, 2023
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  4. lots of C fixes re: compiling

    @molpopgen
    molpopgen committed Jan 13, 2023
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  5. now we build

    @molpopgen
    molpopgen committed Jan 13, 2023
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  6. free

    @molpopgen
    molpopgen committed Jan 13, 2023
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  7. infrastructure

    @molpopgen
    molpopgen committed Jan 13, 2023
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  8. getting safe-ish wrapper in place.

    @molpopgen
    molpopgen committed Jan 13, 2023
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  9. some details

    @molpopgen
    molpopgen committed Jan 13, 2023
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  10. what needs to happen

    @molpopgen
    molpopgen committed Jan 13, 2023
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Commits on Jan 16, 2023

  1. draft impl for simplifying using streaming simplifier

    @molpopgen
    molpopgen committed Jan 16, 2023
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  2. make new fn pub

    @molpopgen
    molpopgen committed Jan 16, 2023
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  3. fix segfault. find safety issues that is a bit of a doozy.

    @molpopgen
    molpopgen committed Jan 16, 2023
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  4. fix finalise

    @molpopgen
    molpopgen committed Jan 16, 2023
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  5. confusion reigns right now

    @molpopgen
    molpopgen committed Jan 16, 2023
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  6. more print debug

    @molpopgen
    molpopgen committed Jan 16, 2023
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  7. hmmm

    @molpopgen
    molpopgen committed Jan 16, 2023
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  8. C-side stress

    @molpopgen
    molpopgen committed Jan 16, 2023
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  9. not erroring any more

    @molpopgen
    molpopgen committed Jan 16, 2023
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  10. clean out debug code

    @molpopgen
    molpopgen committed Jan 16, 2023
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  11. on our way to copy-free

    @molpopgen
    molpopgen committed Jan 16, 2023
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  12. more back end

    @molpopgen
    molpopgen committed Jan 16, 2023
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  13. borrow checker hates this

    @molpopgen
    molpopgen committed Jan 16, 2023
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  14. maybe on to something

    @molpopgen
    molpopgen committed Jan 16, 2023
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  15. tests fail for overlapping generations

    @molpopgen
    molpopgen committed Jan 16, 2023
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  16. some tidy, some messy

    @molpopgen
    molpopgen committed Jan 16, 2023
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  17. different failure point now

    @molpopgen
    molpopgen committed Jan 16, 2023
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  18. works for overlapping gens now

    @molpopgen
    molpopgen committed Jan 16, 2023
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Commits on Jan 17, 2023

  1. start to abstract out so that we can directly compare results via tests

    @molpopgen
    molpopgen committed Jan 17, 2023
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  2. standard case

    @molpopgen
    molpopgen committed Jan 17, 2023
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  3. and now the new hotness

    @molpopgen
    molpopgen committed Jan 17, 2023
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  4. getting there

    @molpopgen
    molpopgen committed Jan 17, 2023
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  5. delete reduntant test

    @molpopgen
    molpopgen committed Jan 17, 2023
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  6. branch lengths messing up?

    @molpopgen
    molpopgen committed Jan 17, 2023
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  7. nope, still broken

    @molpopgen
    molpopgen committed Jan 17, 2023
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  8. num edges is the problem

    @molpopgen
    molpopgen committed Jan 17, 2023
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  9. refactor for fmt/lsp

    @molpopgen
    molpopgen committed Jan 17, 2023
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  10. improve match in tests

    @molpopgen
    molpopgen committed Jan 17, 2023
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  11. tests pass

    @molpopgen
    molpopgen committed Jan 17, 2023
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  12. remove uneeded test fn in trait

    @molpopgen
    molpopgen committed Jan 17, 2023
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  13. dedup the tests

    @molpopgen
    molpopgen committed Jan 17, 2023
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  14. add crossover to the test

    @molpopgen
    molpopgen committed Jan 17, 2023
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  15. one fix due to a failing proptest

    @molpopgen
    molpopgen committed Jan 17, 2023
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  16. fix error in registering children during post-simplification bufferin… 

    …g for overlapping generations
    @molpopgen
    molpopgen committed Jan 17, 2023
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  17. remove duplicated effort

    @molpopgen
    molpopgen committed Jan 17, 2023
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  18. ;

    @molpopgen
    molpopgen committed Jan 17, 2023
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  19. note for the future

    @molpopgen
    molpopgen committed Jan 17, 2023
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Commits on Jan 18, 2023

  1. make popsize/nsteps top-level variables in test

    @molpopgen
    molpopgen committed Jan 18, 2023
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  2. update TODO list

    @molpopgen
    molpopgen committed Jan 18, 2023
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  3. simplify things a lot

    @molpopgen
    molpopgen committed Jan 18, 2023
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