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---
title: population-scale genomics
layout: default
description: Tskit-dev - An open-source software ecosystem using tree sequences for efficient and scalable genomics.
---
<div class="page-wrapper home">
<!-- START: header -->
<header class="header">
<!-- START: navbar -->
{% include navbar.html %}
<!-- END: navbar -->
<!-- START: heading -->
<div class="page-heading">
<div class="container">
<div class="row">
<div class="col">
<h1 class="page-heading__text">
<span class="page-heading__text__highlight">Population-scale</span> genomics
</h1>
</div>
</div>
</div>
</div>
<!-- END: heading -->
</header>
<!-- END: header -->
<!-- START: content -->
<main class="page-content" id="content">
<!-- START: hero-type-1 -->
<div class="hero hero--type-1">
<div class="container">
<div class="row">
<div class="col-md-8 col-lg-6">
<h2 class="hero__heading">
tskit for genetics research
</h2>
<div class="hero__content wysiwyg">
<p>
Tskit enables performant storage, manipulation and analysis of genomes and phylogenies
using
succinct tree sequences usable from Python, C and R. Other software programs use tskit,
forming an interoperating ecosystem of tools.
</p>
<p>
This site is a collection of resources to help you <a href="{{ '/learn' | relative_url }}">learn about tree
sequences</a> and
<a href="{{ '/software' | relative_url }}">associated software</a>, and help you join the <a href="{{ '/community' | relative_url }}">online
community</a> of open source developers
that makes it all possible.
</p>
</div>
</div>
</div>
</div>
</div>
<!-- END: hero-type-1 -->
<!-- START: call-to-action-type-1 -->
<section class="section section--call-to-action call-to-action call-to-action--type-1">
<div class="container">
<div class="row">
<div class="col-lg-10 offset-lg-1">
<div class="call-to-action__content">
<h3 class="call-to-action__heading">
New to tskit?
</h3>
<p class="call-to-action__text">
Find out how tskit can help you in your research
</p>
<a href="{{ '/genetics-research' | relative_url }}" class="btn btn--type-1">
Discover
</a>
</div>
</div>
</div>
</div>
</section>
<!-- END: call-to-action-type-1 -->
<!-- START: cards-type-1 -->
<section class="section section--cards section--cards--type-1">
<div class="container">
<div class="row">
<div class="col-md-8">
<h2 class="section__heading">
Looking for tskit software?
</h2>
</div>
</div>
<div class="row">
<div class="col-lg-4">
<!-- START: card -->
<div class="card">
<h3 class="card__heading">
Simulate
</h3>
{% assign sims = site.software | where: "category","simulate" %}
{% for app in sims %}
<a href="{{ app.url | relative_url}}" class="list__item__link link link--type-1 link--type-1--size-1">
<span class="link__text">
{{ app.name }}
</span>
</a>
{% endfor %}
</div>
<!-- END: card -->
</div>
<div class="col-lg-4">
<!-- START: card -->
<div class="card">
<h3 class="card__heading">
Analyse
</h3>
{% assign sims = site.software | where: "category","analyse" %}
{% for app in sims %}
<a href="{{ app.url | relative_url}}" class="list__item__link link link--type-1 link--type-1--size-1">
<span class="link__text">
{{ app.name }}
</span>
</a>
{% endfor %}
</div>
<!-- END: card -->
</div>
<div class="col-lg-4">
<!-- START: card -->
<div class="card">
<h3 class="card__heading">
Infer
</h3>
{% assign sims = site.software | where: "category","infer" %}
{% for app in sims %}
<a href="{{ app.url | relative_url}}" class="list__item__link link link--type-1 link--type-1--size-1">
<span class="link__text">
{{ app.name }}
</span>
</a>
{% endfor %}
</div>
<!-- END: card -->
</div>
</div>
</div>
</section>
<!-- END: cards -->
<!-- START: icon-links-list -->
<section class="section section--icon-links-list">
<div class="container">
<div class="row">
<div class="col-md-8">
<h2 class="section__heading">
See how tskit applies to your research
</h2>
</div>
</div>
<div class="row section__position-anchor">
<!-- NOTE: Don't change these column values, it'll break the icon positioning! -->
<div class="col-md-6 offset-md-5">
<ul class="list list--unstyled">
<li class="list__item">
<a href="{{ '/genetics-research/#popgen' | relative_url}}" class="link link--type-1 link--type-1--size-1 link--type-1--bg-1">
<span class="link__text">
Population genetics research
</span>
</a>
<!-- START: icon-population-genetics-research -->
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xmlns="http://www.w3.org/2000/svg" x="0" y="0"
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</li>
<li class="list__item">
<a href="{{ '/genetics-research/#statgen' | relative_url}}" class="link link--type-1 link--type-1--size-1 link--type-1--bg-1">
<span class="link__text">
Statistical genetics research
</span>
</a>
<!-- START: icon-statistical-genetics-research -->
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<a href="{{ '/genetics-research/#phylogen' | relative_url}}" class="link link--type-1 link--type-1--size-1 link--type-1--bg-1">
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