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1. panvc3 panvc3 Public

   Variant calling using a pan-genomic reference, version 3

   C++ 1

2. vcf2multialign vcf2multialign Public

   Create a set of reference-guided multiple-aligned haplotypes or founder sequences from a variant call file and a reference sequence.

   C++ 4 1

3. founder-sequences founder-sequences Public

   Create a set of founder sequences from a set of multiple-aligned sequences.

   C++ 5 1

4. compact-superstring compact-superstring Public

   Use a greedy approximation algorithm to find the shortest common superstring of given strings.

   C++ 2