diff --git a/.github/workflows/test-on-push-to-main.yml b/.github/workflows/test-on-main.yml similarity index 98% rename from .github/workflows/test-on-push-to-main.yml rename to .github/workflows/test-on-main.yml index 81362735..298c38d8 100644 --- a/.github/workflows/test-on-push-to-main.yml +++ b/.github/workflows/test-on-main.yml @@ -1,4 +1,4 @@ -name: 'test-on-push-to-main' +name: 'test-on-main' on: push: branches: diff --git a/.gitignore b/.gitignore index 167aa7fc..6df845ad 100644 --- a/.gitignore +++ b/.gitignore @@ -1,51 +1,28 @@ -# python +# development .venv *.pyc .pytest_cache __pycache__ .coverage test-tmp/ - -# config -config/config.json -config/config.tmp.json -config/*.lock -.env -packages/cli/alias/pyra-cli.bat - -# logs -*.log -logs/.logs.lock -npm-debug.log* -yarn-debug.log* -yarn-error.log* -lerna-debug.log* +.DS_Store +.vscode/ +.idea +hidden/ # runtime data pids +*.log +.env *.pid *.seed -*.pid.lock -.DS_Store +*.lock +!yarn.lock +!poetry.lock *.dat *.txt runtime-data/ -pyra-core-process-state.json -logs/persistent-state.json -logs/activity/*.json -logs/**/*.jpg -!logs/helios/.gitkeep -logs/helios/* - -# pyra ui -packages/electron-ui/node_modules/ -packages/electron-ui/.webpack/ -packages/electron-ui/out/ -packages/ui/node_modules/ - -# development -.vscode/ -.idea -hidden -website/.docusaurus -website/node_modules \ No newline at end of file +config/**/*.json +!config/**/*.default.json +logs/**/* +!logs/**/.gitkeep \ No newline at end of file diff --git a/LICENSE.md b/LICENSE.md new file mode 100644 index 00000000..a5eae152 --- /dev/null +++ b/LICENSE.md @@ -0,0 +1,674 @@ + GNU GENERAL PUBLIC LICENSE + Version 3, 29 June 2007 + +Copyright (C) 2007 Free Software Foundation, Inc. +Everyone is permitted to copy and distribute verbatim copies +of this license document, but changing it is not allowed. + + Preamble + +The GNU General Public License is a free, copyleft license for +software and other kinds of works. + +The licenses for most software and other practical works are designed +to take away your freedom to share and change the works. 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It is safest +to attach them to the start of each source file to most effectively +state the exclusion of warranty; and each file should have at least +the "copyright" line and a pointer to where the full notice is found. + + + Copyright (C) + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + +Also add information on how to contact you by electronic and paper mail. + +If the program does terminal interaction, make it output a short +notice like this when it starts in an interactive mode: + + Copyright (C) + This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'. + This is free software, and you are welcome to redistribute it + under certain conditions; type `show c' for details. + +The hypothetical commands `show w' and `show c' should show the appropriate +parts of the General Public License. Of course, your program's commands +might be different; for a GUI interface, you would use an "about box". + +You should also get your employer (if you work as a programmer) or school, +if any, to sign a "copyright disclaimer" for the program, if necessary. +For more information on this, and how to apply and follow the GNU GPL, see +. + +The GNU General Public License does not permit incorporating your program +into proprietary programs. If your program is a subroutine library, you +may consider it more useful to permit linking proprietary applications with +the library. If this is what you want to do, use the GNU Lesser General +Public License instead of this License. But first, please read +. diff --git a/README.md b/README.md index 9c04731d..65a1c514 100644 --- a/README.md +++ b/README.md @@ -1,33 +1,5 @@ # PYRA -**For installation, see https://github.com/tum-esm/pyra-setup-tool** +**Documentation on: https://pyra-4-documentation.netlify.app** -
- -## Repository Management & CI - -**Branches:** `development-...`, `integration-x.y.z`, `main`, `release`, `prerelease` - -**Hierarchy:** `development-...` contains stuff in active development and will be merged into `integration-x.y.z`. `integration-x.y.z`: Is used during active integration on the stations and will be merged into `main`. `main` contains the latest running version that passed the integration and will be merged into `release` once enough changes have accumulated. Any branch can be released into `prerelease` to run the CI-Pipeline on demand. `prerelease` will not be merged into anything else and is just used for development purposes. - -**Continuous Integration:** The CI-Pipeline runs every time a commit/a series of commits is added to the `release` branch. The CI compiles and bundles the frontend code into an installable windows-application. Then it creates a new release draft and attaches the `.msi` file to the draft. We can then manually add the release description and submit the release. - -**Testing (not in an active CI):** We could add automated tests to the main- and integration branches. However, most things we could test make use of OPUS, Camtracker, Helios, or the enclosure, hence we can only do a subset of our tests in an isolated CI environment without the system present. - -**Issues:** Things we work on are managed via issues - which are bundled into milestones (each milestone represents a release). The issues should be closed once they are on the `main` branch via commit messages ("closes #87", "fixes #70", etc. see [this list of keywords](https://docs.github.com/en/issues/tracking-your-work-with-issues/linking-a-pull-request-to-an-issue#linking-a-pull-request-to-an-issue-using-a-keyword)). Issues that have been finished but are not on the `main` branch yet, can be labeled using the white label "implemented". This way, we can oversee incompleted issues, but don't forget to merge them. - -
- -## Elements - -### FileLocks - -Since we have parallel processes interacting with state, config, and logs, we need to control the access to these resources to avoid race conditions. We use the python module [filelock](https://pypi.org/project/filelock/) for this. Before working with one of these resources, a process has to acquire a file lock for the respective `.state.lock`/`.config.lock`/`.logs.lock` file. When it cannot acquire a lock for 10 seconds, it throws a `TimeoutError`. - -When running into a deadlock, with timeout errors (never happened to us yet), the CLI command `pyra-cli remove-filelocks` removes all present lock files. - -### Version numbers - -Versions up to `4.0.4` are alpha and beta versions that should not be used regularly. PYRA can be generally used starting from version `4.0.5`. - -Inside the codebase, the version number is included 3 times: `pyproject.toml`, `packages/ui/package.json`, `packages/ui/src-tauri/tauri.conf.json`. The script `scripts/sync_version_numbers.py` takes the version number from the `.toml` file and pastes it into the other locations. This script can be run in a [git-hook](https://git-scm.com/book/en/v2/Customizing-Git-Git-Hooks). +[![Netlify Status](https://api.netlify.com/api/v1/badges/d573542a-adb3-446b-ad1a-1a97d07bacd8/deploy-status)](https://app.netlify.com/sites/pyra-4-documentation/deploys) diff --git a/config/config.default.json b/config/config.default.json index 8ccf8c5e..ca4b3b74 100644 --- a/config/config.default.json +++ b/config/config.default.json @@ -1,6 +1,6 @@ { "general": { - "version": "4.0.5", + "version": "4.0.6", "seconds_per_core_interval": 30, "test_mode": false, "station_id": "...", @@ -22,7 +22,7 @@ "motor_offset_threshold": 10 }, "error_email": { - "sender_address": "pyra.technical.user@gmail.com", + "sender_address": "technical-user@domain.com", "sender_password": "...", "notify_recipients": true, "recipients": "your@mail.com" diff --git a/docs/pyra-ui-20220624.excalidraw b/docs/pyra-ui-20220624.excalidraw deleted file mode 100644 index 3bbc5c74..00000000 --- a/docs/pyra-ui-20220624.excalidraw +++ /dev/null @@ -1,2478 +0,0 @@ -{ - 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"viewBackgroundColor": "#ffffff" - }, - "files": {} -} \ No newline at end of file diff --git a/install.sh b/install.sh deleted file mode 100644 index 0d0135f5..00000000 --- a/install.sh +++ /dev/null @@ -1,8 +0,0 @@ - -python3.10 -m venv .venv -source .venv/bin/activate -poetry install - -cp config/config.default.json config/config.json - -# TODO: Download pyra-ui executable and put it in the project directory diff --git a/netlify.toml b/netlify.toml new file mode 100644 index 00000000..034c500e --- /dev/null +++ b/netlify.toml @@ -0,0 +1,4 @@ +[build] + base = "packages/docs/" + publish = "build" + command = "yarn build" \ No newline at end of file diff --git a/packages/cli/commands/config.py b/packages/cli/commands/config.py index febb9ad0..15a50328 100644 --- a/packages/cli/commands/config.py +++ b/packages/cli/commands/config.py @@ -24,7 +24,9 @@ def print_red(text: str) -> None: click.echo(click.style(text, fg="red")) -@click.command(help="Read the current config.json file.") +@click.command( + help="Read the current config.json file. If it does not exist, use the config.default.json as the config.json. The command validates the structure of the config.json but skips verifying filepath existence." +) @with_filelock(CONFIG_LOCK_PATH) def _get_config() -> None: if not os.path.isfile(CONFIG_FILE_PATH): @@ -41,7 +43,7 @@ def _get_config() -> None: @click.command( short_help="Set the config.json file.", - help=f"Set config. Pass the JSON directly or via a file path. Only a subset of the required config variables has to be passed. The non-occuring values will be reused from the current config.\n\nThe required schema can be found in the documentation.", + help=f"Update config. Only a subset of the required config variables has to be passed. The non-occuring values will be reused from the current config.\n\nThe required schema can be found in the documentation (user guide -> usage).", ) @click.argument("content", default="{}") @with_filelock(CONFIG_LOCK_PATH) @@ -77,7 +79,7 @@ def _update_config(content: str) -> None: @click.command( - help=f"Validate the current config.json file.\n\nThe required schema can be found in the documentation." + help=f"Validate the current config.json file.\n\nThe required schema can be found in the documentation (user guide -> usage). This validation will check filepath existence." ) @with_filelock(CONFIG_LOCK_PATH) def _validate_current_config() -> None: diff --git a/packages/cli/commands/core.py b/packages/cli/commands/core.py index 0927eea9..aad08e6d 100644 --- a/packages/cli/commands/core.py +++ b/packages/cli/commands/core.py @@ -48,7 +48,7 @@ def terminate_processes() -> list[int]: @click.command( - help="Start pyra-core as a background process. " + "Prevents spawning multiple processes" + help="Start pyra-core as a background process. Return the process id. Prevents spawning multiple processes." ) def _start_pyra_core() -> None: existing_pid = process_is_running() @@ -64,7 +64,9 @@ def _start_pyra_core() -> None: print_green(f"Started background process with PID {p.pid}") -@click.command(help="Stop the pyra-core background process") +@click.command( + help="Stop the pyra-core background process. Return the process id of terminated processes. This command will force quit the OPUS process." +) def _stop_pyra_core() -> None: termination_pids = terminate_processes() if len(termination_pids) == 0: @@ -113,7 +115,7 @@ def _stop_pyra_core() -> None: print_red(f"Failed to close OPUS: {e}") -@click.command(help="Checks whether the pyra-core background process is running") +@click.command(help="Checks whether the pyra-core background process is running.") def _pyra_core_is_running() -> None: existing_pid = process_is_running() if existing_pid is not None: diff --git a/packages/cli/commands/logs.py b/packages/cli/commands/logs.py index 6ecc53ca..ce2a4c82 100644 --- a/packages/cli/commands/logs.py +++ b/packages/cli/commands/logs.py @@ -28,7 +28,9 @@ def _read_logs(level: str) -> None: print_red("Level has to be either INFO or DEBUG.") -@click.command(help="Archive the current log files.") +@click.command( + help="Archive the current log files. This command will write all log lines from the current info.log and debug.log files into the logs/archive directory." +) def _archive_logs() -> None: Logger.archive() print_green("done!") diff --git a/packages/cli/commands/plc.py b/packages/cli/commands/plc.py index db7ca9ab..751b7465 100644 --- a/packages/cli/commands/plc.py +++ b/packages/cli/commands/plc.py @@ -106,6 +106,7 @@ def _set_cover_angle(angle: str) -> None: ), "angle has to be 0° or between 110° and 250°" plc_interface.set_manual_control(True) + plc_interface.set_sync_to_tracker(False) plc_interface.set_cover_angle(new_cover_angle) plc_interface.set_manual_control(False) wait_until_cover_is_at_angle(plc_interface, new_cover_angle) diff --git a/packages/cli/commands/remove_filelocks.py b/packages/cli/commands/remove_filelocks.py index 56fb5849..b60084f6 100644 --- a/packages/cli/commands/remove_filelocks.py +++ b/packages/cli/commands/remove_filelocks.py @@ -14,8 +14,7 @@ def print_red(text: str) -> None: @click.command( - help="Remove all filelocks. Helpful when any of the programs crashed " - + "during writing to a file. Should not be necessary normally." + help="Remove all filelocks. Helpful when any of the programs crashed during writing to a file. Normally, this should not be necessary." ) def remove_filelocks() -> None: lock_files = [ diff --git a/packages/cli/commands/state.py b/packages/cli/commands/state.py index 93faa34c..65c751e2 100644 --- a/packages/cli/commands/state.py +++ b/packages/cli/commands/state.py @@ -10,23 +10,19 @@ @click.command(help="Read the current state.json file.") -@click.option("--no-indent", is_flag=True, help="Do not print the JSON in an indented manner") +@click.option("--indent", is_flag=True, help="Print the JSON in an indented manner") @utils.with_filelock(STATE_LOCK_PATH) -def _get_state(no_indent: bool) -> None: +def _get_state(indent: bool) -> None: if not os.path.isfile(STATE_FILE_PATH): interfaces.StateInterface.initialize() with open(STATE_FILE_PATH, "r") as f: try: state_content = json.load(f) - assert isinstance(state_content, dict) - assert isinstance(state_content["measurements_should_be_running"], bool) - assert isinstance(state_content["enclosure_plc_readings"], dict) - assert isinstance(state_content["os_state"], dict) except: raise AssertionError("file not in a valid json format") - click.echo(json.dumps(state_content, indent=(None if no_indent else 2))) + click.echo(json.dumps(state_content, indent=(2 if indent else None))) @click.group() diff --git a/packages/cli/main.py b/packages/cli/main.py index 76544ccd..054bb9da 100644 --- a/packages/cli/main.py +++ b/packages/cli/main.py @@ -16,11 +16,21 @@ ) +@click.command(help="Print Pyra version and code directory path.") +def print_cli_information() -> None: + click.echo( + click.style( + f'This CLI is running Pyra version 4.0.5 in directory "{PROJECT_DIR}".', fg="green" + ) + ) + + @click.group() def cli() -> None: pass +cli.add_command(print_cli_information, name="info") cli.add_command(config_command_group, name="config") cli.add_command(core_command_group, name="core") cli.add_command(logs_command_group, name="logs") diff --git a/packages/core/README.md b/packages/core/README.md deleted file mode 100644 index 6edaf6ab..00000000 --- a/packages/core/README.md +++ /dev/null @@ -1,62 +0,0 @@ -# `pyra-core` - -## Codebase structure - -### Responsibilities - -`types` contains all types used in the codebase. The whole codebase contains static type hints. A static type analysis can be done using `mypy` (see `scripts/`). - -`utils` contains all supporting functionality used in one or more places. - -`interfaces` includes the "low-level" code to interact with the PLC, the operating system, and the config- and state-files. - -`modules` contains the different steps that PYRA Core runs sequentially on the main thread. - -`threads` contains the logic that PYRA Core runs in parallel to the main thread. - -### Import hierarchy - -- `types` doesn't import any other code from PYRA Core -- `utils` can import `types` -- `interfaces` can import `types` and `utils` -- `modules` and `threads` can import `interfaces`, `types`, and `utils` -- `main.py` can import all of the above - -```mermaid - graph LR; - A["types"] --> B; - B["utils"] --> C; - C["interfaces"] --> D; - C --> E; - D["modules"] --> F; - E["threads"] --> F["main.py"]; -``` - -_\* the graph is transient_ - -
- -## Logging - -All scripts that output messages at runtime should use the `Logger` class: - -```python -from packages.core import utils - -logger = utils.Logger() - -logger.debug("...") -logger.info("...") -logger.warning("...") -logger.critical("...") -logger.error("...") - - -# By default, it will log from a "pyra.core" origin -logger = utils.Logger() - -# Here, it will log from a "camtracker" origin -logger = utils.Logger(origin="camtracker") -``` - -Messages from all log levels can be found in `logs/debug.log`, messages from levels INFO/WARNING/CRITICAL/ERROR can be found in `logs/info.log`. diff --git a/packages/core/interfaces/__init__.py b/packages/core/interfaces/__init__.py index b8210a9c..0a584ef9 100644 --- a/packages/core/interfaces/__init__.py +++ b/packages/core/interfaces/__init__.py @@ -1,4 +1,5 @@ from .state_interface import StateInterface from .config_interface import ConfigInterface from .plc_interface import PLCInterface +from .ssh_interface import SSHInterface from .os_interface import OSInterface diff --git a/packages/core/interfaces/os_interface.py b/packages/core/interfaces/os_interface.py index 95466d2c..6b87d424 100644 --- a/packages/core/interfaces/os_interface.py +++ b/packages/core/interfaces/os_interface.py @@ -40,28 +40,6 @@ def validate_disk_space() -> None: "Disk space is less than 10%. This is bad for the OS stability." ) - # TODO: function is not working as expected. Needs revision. - @staticmethod - def get_connection_status( - ip: str, - ) -> str: - """ - Takes ip address as input str: i.e. 10.10.0.4 - Checks the ip connection for that address. - """ - - connections = psutil.net_connections(kind="inet4") - - for connection in connections: - if connection.laddr: - if connection.laddr.ip == ip: - return connection.status - if connection.raddr: - if connection.raddr.ip == ip: - return connection.status - - return "NO_INFO" - @staticmethod def get_system_battery() -> int: """ @@ -93,23 +71,7 @@ def get_last_boot_time() -> str: @staticmethod def get_process_status( process_name: str, - ) -> Literal[ - "running", - "sleeping", - "disk-sleep", - "stopped", - "tracing-stop", - "zombie", - "dead", - "wake-kill", - "waking", - "idle", - "locked", - "waiting", - "suspended", - "parked", - "not-found", - ]: + ) -> str: """ Takes a process name "*.exe" and returns its OS process status (see return types). diff --git a/packages/core/interfaces/plc_interface.py b/packages/core/interfaces/plc_interface.py index d72595a7..0c4459d0 100644 --- a/packages/core/interfaces/plc_interface.py +++ b/packages/core/interfaces/plc_interface.py @@ -10,7 +10,6 @@ dir = os.path.dirname PROJECT_DIR = dir(dir(dir(dir(os.path.abspath(__file__))))) -# TODO: use tuples (3 ints vs 4 ints) PLC_SPECIFICATION_VERSIONS: dict[Literal[1, 2], types.PlcSpecificationDict] = { 1: { "actors": { @@ -198,8 +197,6 @@ def read(self) -> types.PlcStateDict: Read the whole state of the PLC """ - # TODO: self.plc.read_multi_vars() - plc_db_content: dict[int, int] = {} plc_db_size = {1: {3: 6, 8: 26, 25: 10}, 2: {3: 5, 6: 17, 8: 25}}[self.plc_version] @@ -336,7 +333,6 @@ def __update_bool( if self.__read_bool(spec) != new_state: raise PLCInterface.PLCError("PLC state did not change") - # TODO: check whether this results in a circular import interfaces.StateInterface.update({"enclosure_plc_readings": partial_plc_state}) def set_power_camera(self, new_state: bool) -> None: diff --git a/packages/core/interfaces/ssh_interface.py b/packages/core/interfaces/ssh_interface.py new file mode 100644 index 00000000..e6d73465 --- /dev/null +++ b/packages/core/interfaces/ssh_interface.py @@ -0,0 +1,35 @@ +import contextlib +from typing import Iterator +from packages.core import types + +import fabric.connection, fabric.transfer + + +class SSHInterface: + @staticmethod + class ConnectionError(Exception): + """raised when SSH connection could not be established""" + + @staticmethod + @contextlib.contextmanager + def use( + config: types.ConfigDict, + ) -> Iterator[tuple[fabric.connection.Connection, fabric.transfer.Transfer]]: + assert config["upload"] is not None + + try: + connection = fabric.connection.Connection( + f"{config['upload']['user']}@{config['upload']['host']}", + connect_kwargs={"password": config["upload"]["password"]}, + connect_timeout=5, + ) + transfer_process = fabric.transfer.Transfer(connection) + + connection.open() + assert connection.is_connected, "could not open the connection" + + yield (connection, transfer_process) + except Exception as e: + raise SSHInterface.ConnectionError(e) + finally: + connection.close() diff --git a/packages/core/interfaces/state_interface.py b/packages/core/interfaces/state_interface.py index 69451e5d..265e5540 100644 --- a/packages/core/interfaces/state_interface.py +++ b/packages/core/interfaces/state_interface.py @@ -70,6 +70,8 @@ "current_exceptions": [], } +logger = utils.Logger(origin="state-interface") + class StateInterface: @staticmethod @@ -113,19 +115,41 @@ def initialize() -> None: @utils.with_filelock(STATE_LOCK_PATH, timeout=10) def read() -> types.StateDict: """Read the state file and return its content""" - with open(STATE_FILE_PATH, "r") as f: - new_object: types.StateDict = json.load(f) - types.validate_state_dict(new_object) - return new_object + return StateInterface.read_without_filelock() + + @staticmethod + def read_without_filelock() -> types.StateDict: + """Read the state file and return its content""" + try: + with open(STATE_FILE_PATH, "r") as f: + new_object: types.StateDict = json.load(f) + types.validate_state_dict(new_object) + return new_object + except (FileNotFoundError, json.JSONDecodeError): + logger.warning("reinitializing the corrupted state file") + with open(STATE_FILE_PATH, "w") as f: + json.dump(EMPTY_STATE_OBJECT, f, indent=4) + return EMPTY_STATE_OBJECT @staticmethod @utils.with_filelock(STATE_LOCK_PATH, timeout=10) def read_persistent() -> types.PersistentStateDict: """Read the persistent state file and return its content""" - with open(PERSISTENT_STATE_FILE_PATH, "r") as f: - new_object: types.PersistentStateDict = json.load(f) - types.validate_persistent_state_dict(new_object) - return new_object + return StateInterface.read_persistent_without_filelock() + + @staticmethod + def read_persistent_without_filelock() -> types.PersistentStateDict: + """Read the persistent state file and return its content""" + try: + with open(PERSISTENT_STATE_FILE_PATH, "r") as f: + new_object: types.PersistentStateDict = json.load(f) + types.validate_persistent_state_dict(new_object) + return new_object + except (FileNotFoundError, json.JSONDecodeError): + logger.warning("reinitializing the corrupted persistent state file") + with open(PERSISTENT_STATE_FILE_PATH, "w") as f: + json.dump(EMPTY_PERSISTENT_STATE_OBJECT, f, indent=4) + return EMPTY_PERSISTENT_STATE_OBJECT @staticmethod @utils.with_filelock(STATE_LOCK_PATH, timeout=10) @@ -135,10 +159,7 @@ def update(update: types.StateDictPartial) -> None: The update object should only include the properties to be changed in contrast to containing the whole file. """ - - with open(STATE_FILE_PATH, "r") as f: - current_state = json.load(f) - + current_state = StateInterface.read_without_filelock() new_state = utils.update_dict_recursively(current_state, update) with open(STATE_FILE_PATH, "w") as f: json.dump(new_state, f, indent=4) @@ -152,10 +173,7 @@ def update_persistent(update: types.PersistentStateDictPartial) -> None: changed in contrast to containing the whole file. """ - with open(PERSISTENT_STATE_FILE_PATH, "r") as f: - current_state = json.load(f) - types.validate_persistent_state_dict(current_state) - + current_state = StateInterface.read_persistent_without_filelock() new_state = utils.update_dict_recursively(current_state, update) with open(PERSISTENT_STATE_FILE_PATH, "w") as f: json.dump(new_state, f, indent=4) diff --git a/packages/core/modules/enclosure_control.py b/packages/core/modules/enclosure_control.py index a9ddea7d..5a0e1f9f 100644 --- a/packages/core/modules/enclosure_control.py +++ b/packages/core/modules/enclosure_control.py @@ -90,8 +90,6 @@ def run(self, new_config: types.ConfigDict) -> None: ) self.plc_interface.connect() - # TODO: possibly end function if plc is not connected - # Reads and returns the latest PLC database states try: self.plc_state = self.plc_interface.read() diff --git a/packages/core/modules/opus_measurement.py b/packages/core/modules/opus_measurement.py index 1831bba5..98ebef74 100644 --- a/packages/core/modules/opus_measurement.py +++ b/packages/core/modules/opus_measurement.py @@ -148,15 +148,6 @@ def load_experiment(self) -> None: logger.info(f"Loaded new OPUS experiment: {experiment_path}") self.current_experiment = experiment_path - # TODO: why does the following logic not work anymore - """ - if "OK" in answer: - logger.info("Loaded new OPUS experiment: {}.".format(full_path)) - self.current_experiment = full_path - else: - logger.info("Could not load OPUS experiment as expected.") - """ - def start_macro(self) -> None: """Starts a new macro in OPUS over DDE connection.""" assert sys.platform == "win32" @@ -171,17 +162,6 @@ def start_macro(self) -> None: answer = self.conversation.Request(f"RUN_MACRO {macro_path}") logger.info(f"Started OPUS macro: {macro_path}") - # TODO: why does the following logic not work anymore - """ - active_macro_id = str(answer[4:-1]) - StateInterface.update({"active_opus_macro_id": active_macro_id}, persistent=True) - - if "OK" in answer: - logger.info(f"Started OPUS macro: {macro_basename} with id: {active_macro_id}.") - else: - logger.info(f"Could not start OPUS macro with id: {active_macro_id} as expected.") - """ - def stop_macro(self) -> None: """Stops the currently running macro in OPUS over DDE connection.""" assert sys.platform == "win32" @@ -196,15 +176,6 @@ def stop_macro(self) -> None: answer = self.conversation.Request("KILL_MACRO " + macro_path) logger.info(f"Stopped OPUS macro: {macro_path}") - # TODO: why does the following logic not work anymore - """ - if "OK" in answer: - logger.info(f"Stopped OPUS macro: {macro_basename} with id: {active_macro_id}.") - StateInterface.update({"active_opus_macro_id": None}, persistent=True) - else: - logger.info(f"Could not stop OPUS macro with id: {active_macro_id} as expected.") - """ - def close_opus(self) -> None: """Closes OPUS via DDE call.""" assert sys.platform == "win32" @@ -216,14 +187,6 @@ def close_opus(self) -> None: answer = self.conversation.Request("CLOSE_OPUS") logger.info("Stopped OPUS.exe") - # TODO: why does the following logic not work anymore - """ - if "OK" in answer: - logger.info("Stopped OPUS.exe") - else: - logger.info("No response for OPUS.exe close request.") - """ - def __shutdown_dde_server(self) -> None: """Note the underlying DDE object (ie, Server, Topics and Items) are not cleaned up by this call. diff --git a/packages/core/modules/sun_tracking.py b/packages/core/modules/sun_tracking.py index fc370581..eec0611a 100644 --- a/packages/core/modules/sun_tracking.py +++ b/packages/core/modules/sun_tracking.py @@ -1,5 +1,6 @@ import os import time +from typing import Optional import jdcal import datetime from packages.core import types, utils, interfaces @@ -77,12 +78,16 @@ def run(self, new_config: types.ConfigDict) -> None: ) return - if self.validate_tracker_position(): - logger.debug("CamTracker motor position is valid.") + tracker_position_is_valid = self.validate_tracker_position() + if tracker_position_is_valid is None: + logger.debug("CamTracker motor position is unknown (last log line too old).") else: - logger.info("CamTracker motor position is over threshold.") - logger.info("Stopping CamTracker. Preparing for reinitialization.") - self.stop_sun_tracking_automation() + if tracker_position_is_valid: + logger.debug("CamTracker motor position is valid.") + else: + logger.info("CamTracker motor position is over threshold.") + logger.info("Stopping CamTracker. Preparing for reinitialization.") + self.stop_sun_tracking_automation() def ct_application_running(self) -> bool: """Checks if CamTracker is already running by identifying the active window. @@ -94,8 +99,6 @@ def ct_application_running(self) -> bool: ct_path = self._CONFIG["camtracker"]["executable_path"] process_name = os.path.basename(ct_path) - # TODO: Check whether this list makes sense with - # respect to psutil's return types return interfaces.OSInterface.get_process_status(process_name) in [ "running", "start_pending", @@ -152,7 +155,9 @@ def remove_stop_file(self) -> None: if os.path.exists(stop_file_path): os.remove(stop_file_path) - def read_ct_log_learn_az_elev(self) -> tuple[float, float, float, float, float, float]: + def read_ct_log_learn_az_elev( + self, + ) -> Optional[tuple[float, float, float, float, float, float]]: """Reads the CamTracker Logfile: LEARN_Az_Elev.dat. Returns a list of string parameter: [ @@ -171,8 +176,6 @@ def read_ct_log_learn_az_elev(self) -> tuple[float, float, float, float, float, ct_logfile_path = self._CONFIG["camtracker"]["learn_az_elev_path"] assert os.path.isfile(ct_logfile_path), "camtracker logfile not found" - # TODO: Seek the last line directly instead of reading the whole file - # See https://stackoverflow.com/a/54278929/8255842 with open(ct_logfile_path) as f: last_line = f.readlines()[-1] @@ -191,15 +194,12 @@ def read_ct_log_learn_az_elev(self) -> tuple[float, float, float, float, float, # assert that the log file is up-to-date now = datetime.datetime.now() - assert jddate == ( - now.year, - now.month, - now.day, - ), f'date in file is too old: "{last_line}"' + if jddate != (now.year, now.month, now.day): + return None return float_values # type: ignore - def validate_tracker_position(self) -> bool: + def validate_tracker_position(self) -> Optional[bool]: """Reads motor offsets and compares it with defined threshold. The motor offset defines the difference between the current active and calculated sun angle. @@ -211,6 +211,8 @@ def validate_tracker_position(self) -> bool: # fails if file integrity is broken tracker_status = self.read_ct_log_learn_az_elev() + if tracker_status is None: + return None elev_offset: float = tracker_status[3] az_offeset: float = tracker_status[4] diff --git a/packages/core/threads/helios_thread.py b/packages/core/threads/helios_thread.py index 50e22877..0726ab59 100644 --- a/packages/core/threads/helios_thread.py +++ b/packages/core/threads/helios_thread.py @@ -28,7 +28,6 @@ class _Helios: @staticmethod def init(camera_id: int, retries: int = 5) -> None: - # TODO: Why is this necessary? _Helios.cam = cv.VideoCapture(camera_id, cv.CAP_DSHOW) assert _Helios.cam is not None _Helios.cam.release() diff --git a/packages/core/threads/upload_thread.py b/packages/core/threads/upload_thread.py index b30a60c2..fbb432e7 100644 --- a/packages/core/threads/upload_thread.py +++ b/packages/core/threads/upload_thread.py @@ -5,8 +5,8 @@ import shutil import threading from typing import Optional +import deepdiff import invoke -import paramiko import time import fabric.connection, fabric.transfer import re @@ -18,6 +18,12 @@ dir = os.path.dirname PROJECT_DIR = dir(dir(dir(dir(os.path.abspath(__file__))))) +# when a connection error occurs, wait a few minutes until trying again +CONNECTION_ERROR_IDLE_MINUTES = 5 + +# when an iteration is finished, wait a few minutes until checking again +ITERATION_END_IDLE_MINUTES = 10 + class InvalidUploadState(Exception): pass @@ -345,111 +351,88 @@ def main(headless: bool = False) -> None: while True: try: + logger.info("Starting iteration") config = interfaces.ConfigInterface.read() - upload_config = config["upload"] - logger.info("Starting iteration, loading new config") - if (upload_config is None) or config["general"]["test_mode"]: - logger.info("Ending mainloop") + if config["upload"] is None: + logger.info("Ending thread (upload config is null)") + return + if config["general"]["test_mode"]: + logger.info("Ending thread (Pyra is in test mode)") return try: - connection = fabric.connection.Connection( - f"{upload_config['user']}@{upload_config['host']}", - connect_kwargs={"password": upload_config["password"]}, - connect_timeout=5, - ) - transfer_process = fabric.transfer.Transfer(connection) - except TimeoutError as e: - logger.error(f"could not reach host, waiting 5 minutes: {e}") - if headless: - break - time.sleep(300) - continue - except paramiko.ssh_exception.AuthenticationException as e: - logger.error(f"failed to authenticate, waiting 2 minutes: {e}") - if headless: - break - time.sleep(120) - continue - - restart_mainloop = False - for category in ["helios", "ifgs"]: - if restart_mainloop: - break - - if category == "helios": - if upload_config["upload_helios"]: - src_path = os.path.join(PROJECT_DIR, "logs", "helios") - dst_path = upload_config["dst_directory_helios"] - remove_files_after_upload = upload_config[ - "remove_src_helios_after_upload" - ] - else: - continue - else: - if upload_config["upload_ifgs"]: - src_path = upload_config["src_directory_ifgs"] - dst_path = upload_config["dst_directory_ifgs"] - remove_files_after_upload = upload_config[ - "remove_src_ifgs_after_upload" - ] - if not os.path.isdir(src_path): - logger.error( - f'config.upload.src_directory_ifgs ("{src_path}") is not a directory' - ) - continue - else: - continue - - src_date_strings = DirectoryUploadClient.get_directories_to_be_uploaded( - src_path - ) - for date_string in src_date_strings: - new_config = interfaces.ConfigInterface.read() - new_upload_config = new_config["upload"] - - # check for termination before processing each directory - if (new_upload_config is None) or new_config["general"]["test_mode"]: - return - - # if the config changes, the mainloop should start over - if any( - [ - upload_config[key] != new_upload_config[key] # type: ignore - for key in upload_config.keys() - ] - ): - logger.info("Change in config.upload has been detected") - restart_mainloop = True # stops outer loop (ifg, helios) - break # stops inner loop (ifg-/helios-dates) - - try: - logger.info(f"Starting to process {date_string}") - DirectoryUploadClient( - date_string, - src_path, - dst_path, - remove_files_after_upload, - connection, - transfer_process, - ).run() - except InvalidUploadState as e: - logger.error( - f"uploading {date_string} is stuck in invalid state: {e}" - ) + upload_is_complete = UploadThread.upload_all_files(config) + except interfaces.SSHInterface.ConnectionError as e: + logger.error(f"could not connect to host: {e}") + if not headless: + logger.info(f"waiting {CONNECTION_ERROR_IDLE_MINUTES} minutes") + time.sleep(CONNECTION_ERROR_IDLE_MINUTES * 60) + continue if headless: - break - - # Close SSH and SCP connections - connection.close() + return - if not restart_mainloop: - # Wait 10 minutes before checking all directories again - logger.debug("Finished iteration, sleeping 10 minutes") - time.sleep(600) + if upload_is_complete: + logger.debug( + f"Finished iteration, sleeping {ITERATION_END_IDLE_MINUTES} minutes" + ) + time.sleep(ITERATION_END_IDLE_MINUTES * 60) except Exception as e: - logger.error("Error inside upload thread") + logger.error(f"Error inside upload thread: {e}") logger.exception(e) return + + @staticmethod + def upload_all_files(config: types.ConfigDict) -> bool: + """ + Returns True if all file uploads have been finished. Returns False + if the config has change during upload -> restart with new parameters. + """ + + upload_config = config["upload"] + assert upload_config is not None + + # this will be quite simplified by the "Update: Upload Improvements" + categories = [] + categories += ["helios"] if upload_config["upload_helios"] else [] + categories += ["ifgs"] if upload_config["upload_ifgs"] else [] + + for category in categories: + if category == "helios": + src_path = os.path.join(PROJECT_DIR, "logs", "helios") + dst_path = upload_config["dst_directory_helios"] + remove_files_after_upload = upload_config["remove_src_helios_after_upload"] + else: + src_path = upload_config["src_directory_ifgs"] + dst_path = upload_config["dst_directory_ifgs"] + remove_files_after_upload = upload_config["remove_src_ifgs_after_upload"] + + src_date_strings = DirectoryUploadClient.get_directories_to_be_uploaded(src_path) + for date_string in src_date_strings: + + # abort the upload process when upload config changes + new_config = interfaces.ConfigInterface.read() + difference = deepdiff.DeepDiff(upload_config, new_config["upload"]) + if len(difference) != 0: + logger.info("Change in config.upload has been detected") + return False + + with interfaces.SSHInterface.use(config) as ( + connection, + transfer_process, + ): + try: + logger.info(f"Starting to process {date_string}") + DirectoryUploadClient( + date_string, + src_path, + dst_path, + remove_files_after_upload, + connection, + transfer_process, + ).run() + except InvalidUploadState as e: + logger.error(f"uploading {date_string} is stuck in invalid state: {e}") + + return True diff --git a/packages/core/types/config.py b/packages/core/types/config.py index 69161ec1..393b3305 100644 --- a/packages/core/types/config.py +++ b/packages/core/types/config.py @@ -12,7 +12,7 @@ class ConfigSubDicts: @staticmethod class General(TypedDict): - version: Literal["4.0.5"] + version: Literal["4.0.6"] seconds_per_core_interval: float test_mode: bool station_id: str diff --git a/packages/core/types/plc_specification.py b/packages/core/types/plc_specification.py index d05ac58a..81f6d88b 100644 --- a/packages/core/types/plc_specification.py +++ b/packages/core/types/plc_specification.py @@ -1,7 +1,5 @@ from typing import Optional, TypedDict -# TODO: use tuples (3 ints vs 4 ints) - class _PlcSpecificationDictActors(TypedDict): current_angle: list[int] diff --git a/packages/core/utils/astronomy.py b/packages/core/utils/astronomy.py index 4a5450ed..a556d67e 100644 --- a/packages/core/utils/astronomy.py +++ b/packages/core/utils/astronomy.py @@ -4,10 +4,6 @@ import astropy.units as astropy_units from packages.core import types -# TODO: pass config via functions instea of indirectly more code but way simpler - -# TODO: add static typic (simplify code while doing that (less astropy stuff)) - class Astronomy: CONFIG: Optional[types.ConfigDict] = None diff --git a/packages/core/utils/exception_email_client.py b/packages/core/utils/exception_email_client.py index 8139dc6b..044c5579 100644 --- a/packages/core/utils/exception_email_client.py +++ b/packages/core/utils/exception_email_client.py @@ -50,7 +50,9 @@ def get_current_log_lines() -> list[str]: log_lines_in_email: list[str] = [] included_iterations = 0 for l in latest_log_lines[::-1]: - if ("Starting iteration" in l) or ("Starting mainloop" in l): + if ("main - INFO - Starting iteration" in l) or ( + "main - INFO - Starting mainloop" in l + ): included_iterations += 1 log_lines_in_email.append(l) if included_iterations == 2: diff --git a/packages/docs/.gitignore b/packages/docs/.gitignore new file mode 100644 index 00000000..b2d6de30 --- /dev/null +++ b/packages/docs/.gitignore @@ -0,0 +1,20 @@ +# Dependencies +/node_modules + +# Production +/build + +# Generated files +.docusaurus +.cache-loader + +# Misc +.DS_Store +.env.local +.env.development.local +.env.test.local +.env.production.local + +npm-debug.log* +yarn-debug.log* +yarn-error.log* diff --git a/packages/docs/README.md b/packages/docs/README.md new file mode 100644 index 00000000..aaba2fa1 --- /dev/null +++ b/packages/docs/README.md @@ -0,0 +1,41 @@ +# Website + +This website is built using [Docusaurus 2](https://docusaurus.io/), a modern static website generator. + +### Installation + +``` +$ yarn +``` + +### Local Development + +``` +$ yarn start +``` + +This command starts a local development server and opens up a browser window. Most changes are reflected live without having to restart the server. + +### Build + +``` +$ yarn build +``` + +This command generates static content into the `build` directory and can be served using any static contents hosting service. + +### Deployment + +Using SSH: + +``` +$ USE_SSH=true yarn deploy +``` + +Not using SSH: + +``` +$ GIT_USER= yarn deploy +``` + +If you are using GitHub pages for hosting, this command is a convenient way to build the website and push to the `gh-pages` branch. diff --git a/packages/docs/babel.config.js b/packages/docs/babel.config.js new file mode 100644 index 00000000..e00595da --- /dev/null +++ b/packages/docs/babel.config.js @@ -0,0 +1,3 @@ +module.exports = { + presets: [require.resolve('@docusaurus/core/lib/babel/preset')], +}; diff --git a/packages/docs/docs/contact.mdx b/packages/docs/docs/contact.mdx new file mode 100644 index 00000000..8d086248 --- /dev/null +++ b/packages/docs/docs/contact.mdx @@ -0,0 +1,79 @@ +--- +sidebar_position: 2 +--- + +# Contact + +## Authors + +Pyra was developed by the [Associate Professorship of Environmental Sensing and Modeling](https://www.ee.cit.tum.de/en/esm/home/) at the [Technical University of Munich](https://www.tum.de/en/). Patrick Aigner and Moritz Makowski have implemented Pyra 4 from the ground up. + +
+ +
+
+ Patrick Aigner +
+
+ + M.Sc. Electrical and Computer Engineering + {' '} + | Doctoral Candidate at ESM | + Concept, Architecture, and Implementation of original Pyra, + Coordination, Development of Pyra 4 Core, System Integration |{' '} + + https://www.ee.cit.tum.de/esm/mitarbeiter/patrick-aigner-m-sc/ + {' '} + |{' '} + + https://github.com/patrickjaigner + {' '} + | patrick.aigner[at]tum.de +
+
+
+ +
+ +
+
+ Moritz Makowski +
+
+ B.Sc. Engineering Science |{' '} + + Currently pursuing his M.Sc. Informatics + {' '} + | Architecture of Pyra 4, Development of Pyra 4 Core, CLI, and GUI + and the Project's DevOps and Documentation |{' '} + + https://github.com/dostuffthatmatters + {' '} + | moritz.makowski[at]tum.de +
+
+
+ +## Bug Reports & Feature Requests + +You can track things we are actively working on GitHub: https://github.com/tum-esm/pyra/issues. We gladly accept bug reports and feedback on Pyra. Feel free to ask us any questions about possible features or discuss similar research endeavors. + +Planned updates are listed as [milestones on GitHub](https://github.com/tum-esm/pyra/milestones). diff --git a/packages/docs/docs/developer-guide/_category_.json b/packages/docs/docs/developer-guide/_category_.json new file mode 100644 index 00000000..21214fb9 --- /dev/null +++ b/packages/docs/docs/developer-guide/_category_.json @@ -0,0 +1,7 @@ +{ + "label": "Developer Guide", + "position": 4, + "link": { + "type": "generated-index" + } +} diff --git a/packages/docs/docs/developer-guide/architecture.mdx b/packages/docs/docs/developer-guide/architecture.mdx new file mode 100644 index 00000000..fec1afec --- /dev/null +++ b/packages/docs/docs/developer-guide/architecture.mdx @@ -0,0 +1,52 @@ +--- +sidebar_position: 1 +--- + +# Architecture + +**The hierarchy between the three parts of Pyra:** + + + +**Inside Pyra Core's main loop:** + +- The Core will infinitely loop over the modules `MeasurementConditions`, `EnclosureControl`, `SunTracking`, `OpusMeasurements`, and `SystemChecks` +- The Core will start the Upload- and Helios-Thread when they should be running but are not +- The threads will stop themselves based on the config + +**The communication via the `state.json` file:** + + + +
+
+ +## Pyre Core Directory structure + +### Responsibilities + +- `types` contains all types used in the codebase. The whole codebase contains static type hints. A static-type analysis can be done using MyPy (see `scripts/`). +- `utils` contains all supporting functionality used in one or more places. +- `interfaces` includes the "low-level" code to interact with the PLC, the operating system, and the config- and state files. +- `modules` contains the different steps that Pyra Core runs sequentially on the main thread. +- `threads` contains the logic that Pyra Core runs in parallel to the main thread. + +### Import hierarchy + +```mermaid + graph LR; + A["types"] -- imported by --> B; + B["utils"] -- imported by --> C; + C["interfaces"] -- imported by --> D; + C -- imported by --> E; + D["modules"] -- imported by --> F; + E["threads"] -- imported by --> F["main.py"]; +``` + +_\* the graph is transient_ diff --git a/packages/docs/docs/developer-guide/external-interfaces.mdx b/packages/docs/docs/developer-guide/external-interfaces.mdx new file mode 100644 index 00000000..4a55f9dd --- /dev/null +++ b/packages/docs/docs/developer-guide/external-interfaces.mdx @@ -0,0 +1,79 @@ +--- +sidebar_position: 3 +sidebar_label: External Interfaces +--- + +# Interfaces with external programs + +## OPUS + +We are using the `pywin32` Python library, which provides an interface to the [Windows DDE APIs](https://en.wikipedia.org/wiki/Dynamic_Data_Exchange). Pyra Core uses DDE to communicate with OPUS: Loading experiment files, starting and stopping macros, and stopping OPUS itself. + +```python +import dde + +# initialize DDE client +server = dde.CreateServer() +server.Create("Client") +conversation = dde.CreateConversation(server) + +# connect to OPUS +conversation.ConnectTo("OPUS", "OPUS/System") +assert self.conversation.Connected() + +# send a command to OPUS +macro_path = "..." +answer = conversation.Request(f"RUN_MACRO {macro_path}") +logger.info(f"Started OPUS macro: {macro_path}") +``` + +:::note + +We are working on improving the reliability of that connection: https://github.com/tum-esm/pyra/issues/124 + +::: + +## CamTracker + +The `CamTrackerConfig.txt` file contains coordinates that Pyra Core uses in its Astronomy utility class. The coordinates can be found by looking for the `$1` mark inside the file: + +``` +... + +$1 +48.15 +11.57 +0.54 + +... +``` + +The `LEARN_Az_Elev.dat` file contains CamTracker's logs about mirror position and currently estimated sun position. Example: + +```dat +Julian Date, Tracker Elevation, Tracker Azimuth, Elev Offset from Astro, Az Offset from Astro, Ellipse distance/px + 2458332.922778,107.490800,149.545000,0.197305,0.188938,705.047211 + 2458332.922836,107.494400,149.761400,0.192179,0.365420,736.914133 + 2458332.922905,107.498400,150.208200,0.188914,0.778934,736.914133 + 2458332.922975,107.499200,149.811600,0.179557,0.335728,736.914133 + 2458332.923032,107.508400,149.647800,0.182958,0.145281,736.914133 + ... +``` + +The `SunIntensity.dat` file contains CamTracker's own evaluation of the sun conditions. This is currently not used in Pyra Core, but might be in the future. Example: + +```dat +Julian Date, Date UTC[yyyy/MM/dd HH:mm:ss], Intensity[px*ms], big and small obj good + 2457057.199028, 2015/02/03 16:46:36, 0.000000, good + 2457057.200347, 2015/02/03 16:48:30, 0.000000, good + 2458332.906019, 2018/08/02 09:44:40, 0.000000, good + 2458332.906088, 2018/08/02 09:44:46, nan, bad + 2458332.906169, 2018/08/02 09:44:53, nan, bad + ... +``` + +When stopping CamTracker, we have to add a `stop.txt` inside CamTracker's code directory and the application will shut down gracefully. + +## TUM PLC + +We are using the Snap7 Python library to communicate with the TUM PLC. Here is a manual for the underlying Snap7 API: http://snap7.sourceforge.net/sharp7.html diff --git a/packages/docs/docs/developer-guide/internal-interfaces.mdx b/packages/docs/docs/developer-guide/internal-interfaces.mdx new file mode 100644 index 00000000..cdaef3c7 --- /dev/null +++ b/packages/docs/docs/developer-guide/internal-interfaces.mdx @@ -0,0 +1,236 @@ +--- +sidebar_position: 2 +sidebar_label: Internal Interfaces +--- + +# Interfaces used internally + +## `config.json` + +The config file under `config/config.json` contains all parameters to tweak Pyra's operation. Schema: + +```typescript +export type config = { + general: { + version: '4.0.5'; + seconds_per_core_interval: number; + test_mode: boolean; + station_id: string; + min_sun_elevation: number; + }; + opus: { + em27_ip: string; + executable_path: string; + experiment_path: string; + macro_path: string; + username: string; + password: string; + }; + camtracker: { + config_path: string; + executable_path: string; + learn_az_elev_path: string; + sun_intensity_path: string; + motor_offset_threshold: number; + }; + error_email: { + sender_address: string; + sender_password: string; + notify_recipients: boolean; + recipients: string; + }; + measurement_decision: { + mode: 'automatic' | 'manual' | 'cli'; + manual_decision_result: boolean; + cli_decision_result: boolean; + }; + measurement_triggers: { + consider_time: boolean; + consider_sun_elevation: boolean; + consider_helios: boolean; + start_time: { hour: number; minute: number; second: number }; + stop_time: { hour: number; minute: number; second: number }; + min_sun_elevation: number; + }; + tum_plc: null | { + ip: string; + version: number; + controlled_by_user: boolean; + }; + helios: null | { + camera_id: number; + evaluation_size: number; + seconds_per_interval: number; + measurement_threshold: number; + edge_detection_threshold: number; + save_images: boolean; + }; + upload: null | { + host: string; + user: string; + password: string; + upload_ifgs: boolean; + src_directory_ifgs: string; + dst_directory_ifgs: string; + remove_src_ifgs_after_upload: boolean; + upload_helios: boolean; + dst_directory_helios: string; + remove_src_helios_after_upload: boolean; + }; +}; +``` + +In addition to this schema, there are value rules that are validated when parsing the config object: + +```python +assertions: list[Callable[[], None]] = [ + lambda: assert_min_max("general.seconds_per_core_interval", 5, 600), + lambda: assert_min_max("general.min_sun_elevation", 0, 90), + lambda: assert_ip_address("opus.em27_ip"), + lambda: assert_file_path("opus.executable_path"), + lambda: assert_file_path("opus.experiment_path"), + lambda: assert_file_path("opus.macro_path"), + lambda: assert_file_path("camtracker.config_path"), + lambda: assert_file_path("camtracker.executable_path"), + lambda: assert_file_path("camtracker.learn_az_elev_path"), + lambda: assert_file_path("camtracker.sun_intensity_path"), + lambda: assert_min_max("camtracker.motor_offset_threshold", -360, 360), + lambda: assert_min_max("measurement_triggers.min_sun_elevation", 0, 90), + lambda: assert_min_max("measurement_triggers.start_time.hour", 0, 23), + lambda: assert_min_max("measurement_triggers.stop_time.hour", 0, 23), + lambda: assert_min_max("measurement_triggers.start_time.minute", 0, 59), + lambda: assert_min_max("measurement_triggers.stop_time.minute", 0, 59), + lambda: assert_min_max("measurement_triggers.start_time.second", 0, 59), + lambda: assert_min_max("measurement_triggers.stop_time.second", 0, 59), + lambda: assert_ip_address("tum_plc.ip"), + lambda: assert_min_max("helios.camera_id", 0, 999999), + lambda: assert_min_max("helios.evaluation_size", 1, 100), + lambda: assert_min_max("helios.seconds_per_interval", 5, 600), + lambda: assert_min_max("helios.measurement_threshold", 0.1, 1), + lambda: assert_ip_address("upload.host"), +] +``` + +## `state.json` and `persistent-state.json` + +The state file is generated under `runtime-data/state.json`. Pyra Core writes its internal values to this file. The state file is used to communicate between modules as well as with the "outside" world (UI, CLI). Its schema: + +```typescript +type coreState = { + helios_indicates_good_conditions: boolean | null; + measurements_should_be_running: boolean; + enclosure_plc_readings: { + last_read_time: string | null; + actors: { + fan_speed: number | null; + current_angle: number | null; + }; + control: { + auto_temp_mode: boolean | null; + manual_control: boolean | null; + manual_temp_mode: boolean | null; + sync_to_tracker: boolean | null; + }; + sensors: { + humidity: number | null; + temperature: number | null; + }; + state: { + cover_closed: boolean | null; + motor_failed: boolean | null; + rain: boolean | null; + reset_needed: boolean | null; + ups_alert: boolean | null; + }; + power: { + camera: boolean | null; + computer: boolean | null; + heater: boolean | null; + router: boolean | null; + spectrometer: boolean | null; + }; + connections: { + camera: boolean | null; + computer: boolean | null; + heater: boolean | null; + router: boolean | null; + spectrometer: boolean | null; + }; + }; + os_state: { + cpu_usage: number | null; + memory_usage: number | null; + last_boot_time: string | null; + filled_disk_space_fraction: number | null; + }; +}; +``` + +The persistent-state file is generated under `logs/persistent-state.json`. It is currently only used by the Core and will not be reset with a restart of the Core. Its schema: + +```typescript +type persistentCoreState = { + active_opus_macro_id: null | number; + current_exceptions: string[]; +}; +``` + +## Validation strategy + +[MyPy](https://github.com/python/mypy) will make full use of the schemas included above (see [testing](/docs/developer-guide/testing-and-ci)). Whenever loading the config- or state files, the respective schema validation will run. Hence, Pyra will detect when a JSON file does not have the expected schema and raise a precise Exception. All internal code interfaces (function calls, etc.) are covered by the strict MyPy validation. + +:::info + +With `pyra-cli config get` only the schema will be validated, not the value rules. This is because the GUI can deal with invalid values, but not with an invalid schema. + +::: + +## How the UI reads logs and state + +The UI reads the log files and the state file periodically using [Tauri's file system API](https://tauri.app/v1/api/js/modules/fs). We tested using sockets or file watchers, but both did not work well on Windows, and reading it periodically is the most basic implementation. + +## Logging + +All scripts that output messages at runtime should use the `Logger` class: + +```python +from packages.core import utils + +logger = utils.Logger() + +logger.debug("...") +logger.info("...") +logger.warning("...") +logger.critical("...") +logger.error("...") + + +# By default, it will log from a "pyra.core" origin +logger = utils.Logger() + +# Here, it will log from a "camtracker" origin +logger = utils.Logger(origin="camtracker") +``` + +Messages from all log levels can be found in `logs/debug.log`, and messages from levels INFO/WARNING/CRITICAL/ERROR can be found in `logs/info.log`. + +## Activity Log + +_Pyra Core_ will write important events to "activity logs" stored in `logs/activity/activity-YYYY-MM-DD.json`. This is duplicate information as in the regular log files, but significantly easier to parse. + +```typescript +export type activityHistory = { + localTime: string; + event: + | 'start-core' + | 'stop-core' + | 'start-measurements' + | 'stop-measurements' + | 'error-occured' + | 'errors-resolved'; +}[]; +``` + +## Pyra CLI commands from UI + +All write operations from the UI (update config, etc.) are done by running Pyra CLI commands. This is the reason why we have to use the global Python interpreter instead of a virtual environment: We did not make it work that the [shell interface from Tauri](https://tauri.app/v1/api/js/modules/shell) can make use of a virtual environment. diff --git a/packages/docs/docs/developer-guide/repository-organization.mdx b/packages/docs/docs/developer-guide/repository-organization.mdx new file mode 100644 index 00000000..71cebe2a --- /dev/null +++ b/packages/docs/docs/developer-guide/repository-organization.mdx @@ -0,0 +1,97 @@ +--- +sidebar_position: 6 +--- + +# Repository Organization + +## Directory Structure + +``` +📁 .github (contains github actions workflows) + +📁 config (configuration parameters used by pyra core) + 📄 config.json (not in the repository, used by pyra core) + 📄 config.default.json (template) + 📄 helios.config.default.json (template) + 📄 tum_plc.config.default.json (template) + 📄 upload.config.default.json (template) + +📁 logs (logs and other output that pyra core produces) + 📄 info.log (log lines from the last 60 minutes) + 📄 debug.log (log lines from the last 60 minutes) + 📁 archive (daily log files for all older log lines) + 📁 activity (activity logs, jsons, only major events) + 📁 helios (images generated by helios) + 📁 helios-autoexposure (images from helios' autoexposure routine) + +📁 packages (contains the code for pyra core, cli, and ui) + 📁 core (entry point is "main.py") + 📁 cli (entry point is "main.py") + 📁 ui (project structure based on Tauri and Vite) + 📁 docs (documentation generated with docusaurus) + +📁 runtime-data (where pyra core will put temporary data) + +📁 scripts (scripts for manual things) + 📄 get_upload_dir_checksum.py (calculate an upload dir checksum) + 📄 run_type_analysis.py (run mypy on core and cli) + 📄 sync_version_numbers.py (sync version number in all locations) + +📁 tests (tests which can be run using pytest) + 📁 cli (can be run in a ci environment) + 📁 integration (can only be run on working em27 systems) + 📁 repository (can be run in a ci environment) +``` + +## Branch Structure + +**Branches:** `development-...`, `integration-x.y.z`, `main`, `release`, `prerelease` + +**Hierarchy:** + +- `development-...` contains stuff in active development and will be merged into `integration-x.y.z`. +- `integration-x.y.z` is used during active integration on the stations and will be merged into `main`. +- `main` contains the latest running version that passed the integration and will be merged into `release` once enough changes have accumulated. Any branch can be released into `prerelease` to run the CI-Pipeline on demand. +- `prerelease` will not be merged into anything else and is just used for development purposes. + +```mermaid +graph TD; + A["development-person2"]-- "on finishing a set of features" -->C; + B["development-person1"]-- "on finishing a set of features" -->C; + C["integration-x.y.z"]-- "after successful integration" -->D; + D["main"]-- "when creating a release" -->E["release"]; + F["any-branch"]-- "on-demand to bundle the UI" -->G["prerelease"]; +``` + +## Issues and Releases + +Things we work on are managed via issues - which are bundled into milestones (each milestone represents a release). The issues should be closed once they are on the `main` branch via commit messages or pull requests ("closes #87", "fixes #70", etc. see [this list of keywords](https://docs.github.com/en/issues/tracking-your-work-with-issues/linking-a-pull-request-to-an-issue#linking-a-pull-request-to-an-issue-using-a-keyword)). + +**Issue Labels:** + +- + implemented + + : Issues that have been finished but are not on the `main` branch yet. +- + backlog + + : Issues that are not urgent (feature ideas, improvements, etc.) +- + update: ... + + : Used, once we have a set of things for a good release package + +Planned releases are described on [GitHub](https://github.com/tum-esm/pyra/milestones). + +:::info + +We integrate new releases on two different machines. When the new software is running smoothly for some time, we make it an official release. + +::: + +## Version numbers + +Versions up to 4.0.4 are alpha and beta versions that should not be used regularly. Pyra can be generally used starting from version 4.0.5. + +Inside the codebase, the version number is included 3 times: `pyproject.toml`, `packages/ui/package.json`, `packages/ui/src-tauri/tauri.conf.json`. The script `scripts/sync_version_numbers.py` takes the version number from the `.toml` file and pastes it into the other locations. This script can be run in a [git-hook](https://git-scm.com/book/en/v2/Customizing-Git-Git-Hooks). diff --git a/packages/docs/docs/developer-guide/running-pyra-manually.mdx b/packages/docs/docs/developer-guide/running-pyra-manually.mdx new file mode 100644 index 00000000..946f78f1 --- /dev/null +++ b/packages/docs/docs/developer-guide/running-pyra-manually.mdx @@ -0,0 +1,46 @@ +--- +sidebar_position: 4 +--- + +# Running Pyra manually + +## Install dependencies + +Dependency management is done using [Poetry](https://python-poetry.org). `poetry install` installs all dependencies in the currently activated interpreter environment. + +## Pyra Core + +Normally, Pyra should be started via the CLI: + +```bash +pyra-cli core start +pyra-cli core is-running +pyra-cli core stop +``` + +The start command will execute `python run-pyra-core.py` in a background process. + +## Upload/Helios threads + +In Pyra Core's regular operation, it will start and stop Upload and Helios in dedicated threads. These threads will write their output into the Core's log files. You can run these two threads in headless mode (without Pyra Core) and they will print all of their logs to the console: + +```bash +python run-headless-helios-thread.py +python run-headless-upload-thread.py +``` + +## Building the frontend + +Inside the `packages/ui` directory: + +- `yarn` will install all dependencies +- `yarn tauri dev` will start a development server (with hot reload) +- `yarn tauri build` will bundle the Tauri application and put the installer for your operating system into the `packages/ui/src-tauri/target/release/bundle` directory + +## Building the documentation + +Inside the `packages/docs` directory: + +- `yarn` will install all dependencies +- `yarn develop` will start a development server (with hot reload) +- `yarn build` will render the static HTML and bundle the SPA into the `packages/docs/build` directory diff --git a/packages/docs/docs/developer-guide/testing-and-ci.mdx b/packages/docs/docs/developer-guide/testing-and-ci.mdx new file mode 100644 index 00000000..5ebe343d --- /dev/null +++ b/packages/docs/docs/developer-guide/testing-and-ci.mdx @@ -0,0 +1,73 @@ +--- +sidebar_position: 5 +sidebar_label: Testing & CI +--- + +# Testing and Continuous Integration + +## Testing Strategy + +The full software only runs when OPUS and CamTracker are installed and an EM27 is connected. However, in test mode, the software can run on its own without interacting with any modules that require a special setup. Most functionality is tested by running the software and conducting measurements. Since Pyra only starts/stops the measurement process but does not affect output files, these output files from OPUS do not have to be tested. + +## Testing with Pytest + +Testing is done using [PyTest](https://github.com/pytest-dev/pytest/). All tests can be found in the `tests/` directory. There are two types of test functions: + +```python +# can be run without config.json/hardware setup +@pytest.mark.ci +def test_something(): + pass + +# require config.json and hardware setup +@pytest.mark.integration +def test_something_else(): + pass +``` + +Run the two test categories with: + +```bash +python -m pytest -m "ci" tests +python -m pytest -m "integration" tests +``` + +The following can be used to test whether **emailing and uploading** is configured correctly: + +```bash +python -m pytest tests/integration/test_emailing.py +python -m pytest tests/integration/test_upload.py +``` + +## Static Typing for Pyra Core and CLI + +All our python code contains static type annotations. We are using [MyPy](https://github.com/python/mypy) to test the code's integrity. Run this analysis using: + +```bash +bash scripts/run_type_analysis.sh +``` + +We are using the strict MyPy settings with a few exceptions that can be found in `pyproject.toml`. + +## Static Typing for Pyra UI + +The whole frontend is written in [Typescript](https://github.com/microsoft/TypeScript). Testing the code's integrity can be done by building the UI: + +```bash +cd packages/ui +yarn build +``` + +## Continuous Integration + +**Test on Main:** Will run all CI tests, MyPy, and build the UI _on every commit on `main` or every PR on `main`_. + +**Build on Prerelease:** Will build the UI and generates a release named "vX.Y.Z-prerelease (generated by CI)" that has the `.msi` file attached to it _on every commit on `prerelease`_. + +**Build on Release:** Will build the UI and generates a release named "vX.Y.Z (generated by CI)" that has the `.msi` file attached to it _on every commit on `release`_. + +:::info + +The `release` branch should only contain code from the latest official release. Use the `prerelease` branch to bundle the installable UI on demand. + +::: diff --git a/packages/docs/docs/developer-guide/upload-in-detail.mdx b/packages/docs/docs/developer-guide/upload-in-detail.mdx new file mode 100644 index 00000000..f9bf08e5 --- /dev/null +++ b/packages/docs/docs/developer-guide/upload-in-detail.mdx @@ -0,0 +1,27 @@ +--- +sidebar_position: 4 +sidebar_label: Upload in Detail +--- + +# The Upload Process in Detail + +## Upload Steps + +1. Create an empty `upload-meta.json` for new upload processes and upload it to the server +2. Download the `upload-meta.json` from the server if the upload has been started before but interrupted +3. When files are found in the `fileList` that do not exist locally: raise an exception +4. When the remote meta says `complete=True` but there are local files not in `fileList`: raise an exception +5. For every file that is found locally but not in the server side meta, upload it with `scp` +6. Every 25 files - for performance reasons - update the server-side meta-file +7. Upload the file `/scripts/get_upload_dir_checksum.py` to the server and calculate the checksum of the `YYYYMMDD` directory that is on the server (based on `fileList`). +8. Calculate the local checksum using the same script +9. When both checksums match, set `complete=True` in the remote meta and possibly remove the local `YYYYMMDD` directory + +## Causes for an `InvalidUploadState` exception + +Whenever the upload encounters an invalid state, it raises an `InvalidUploadState` exception, which appears in the logs, and continues with the next `YYYYMMDD` directory. Possible causes are: + +- The upload thread crashed during the removal of the local `YYYYMMDD` directory +- Files to the local `YYYYMMDD` directory were added after that day +- Files from the local `YYYYMMDD` directory were removed manually +- The remote meta file was manipulated by hand diff --git a/packages/docs/docs/index.mdx b/packages/docs/docs/index.mdx new file mode 100644 index 00000000..38b97944 --- /dev/null +++ b/packages/docs/docs/index.mdx @@ -0,0 +1,49 @@ +--- +sidebar_position: 1 +sidebar_label: Index +title: Index +--- + +# Pyra 4 Documentation + +## What is Pyra? + +Pyra (name based on [Python]() and [Ra](https://en.wikipedia.org/wiki/Ra)) is a software that automates the operation of [EM27/SUN](https://www.bruker.com/en/products-and-solutions/infrared-and-raman/remote-sensing/em27-sun-solar-absorption-spectrometer.html) measurement setups. Operating EM27/SUN devices requires a lot of human interaction. Pyra makes it possible to autonomously operate these devices 24/7. + +Pyra has enabled the [Technical University of Munich](https://www.tum.de/en/) to collect continuous data from 5 stations around the city of Munich since 2019 using [MUCCnet](https://atmosphere.ei.tum.de/). Versions 1 to 3 of Pyra have been experimental tools, improved internally since 2016. + + + +The goal of Pyra version 4 is to make it even more stable, easy to understand and extend, and usable by the broad EM27/SUN community. + +The software is licensed under GPLv3 and is [open-sourced on GitHub](https://github.com/tum-esm/pyra). Whenever using Pyra, please make sure to cite the codebase. + +## About This Documentation + +This documentation page serves as a guide for both users and developers. By user, we mean people operating Pyra on their EM27/SUN stations. By developers, we target people working on the Pyra 4 codebase itself. + +**For users:** + +- Overview of [what Pyra 4 does](/docs/user-guide/functionality) +- How to [set it up](/docs/user-guide/setup) +- How to [use it and work with the command line interface](/docs/user-guide/usage) +- How the [upload](/docs/user-guide/upload) works +- What the [TUM PLC and Helios](/docs/user-guide/tum-plc-and-helios) +- Answers to [frequently asked euestions](/docs/user-guide/faq) + +**For developers:** + +- High level view of the [architecture](/docs/developer-guide/architecture) +- [Interfaces between program parts](/docs/developer-guide/internal-interfaces) +- [Interfaces to external programs](/docs/developer-guide/external-interfaces) +- How to [manually run the parts of Pyra](/docs/developer-guide/running-pyra-manually) +- How [the repository is organized](/docs/developer-guide/repository-organization) +- How [testing and continuous integration](/docs/developer-guide/testing-and-ci) is set up + +The [contact section](/docs/contact) contains author and contact information, as well as ways to report bugs and suggest new features. + +:::info + +This documentation is **not an API reference**. Pyra 4's code is statically typed, and all functions contain doc strings - hence, the API reference is in the codebase itself. The developer guide serves as a high-level intro to the codebase structure. + +::: diff --git a/packages/docs/docs/user-guide/_category_.json b/packages/docs/docs/user-guide/_category_.json new file mode 100644 index 00000000..dccbf015 --- /dev/null +++ b/packages/docs/docs/user-guide/_category_.json @@ -0,0 +1,7 @@ +{ + "label": "User Guide", + "position": 3, + "link": { + "type": "generated-index" + } +} diff --git a/packages/docs/docs/user-guide/faq.mdx b/packages/docs/docs/user-guide/faq.mdx new file mode 100644 index 00000000..8e238f56 --- /dev/null +++ b/packages/docs/docs/user-guide/faq.mdx @@ -0,0 +1,22 @@ +--- +sidebar_position: 6 +sidebar_label: FAQ +--- + +# FAQ + +## Pyra Shows a `filelock._error.Timeout` Exception + +In theory it is possible that Pyra encounters a deadlock when reading state or log files - although we have never encountered it yet. The error message will say something like this: + +``` +filelock._error.Timeout: The file lock 'C:\Users\ga56fem\Downloads\pyra\pyra-4.0.6\config\.state.lock' could not be acquired. +``` + +You can use the CLI command `pyra-cli remove-filelocks` to resolve that. + +```note + +We are using the python library `filelock` to enforce exclusive use of state- and log-files: There should not be two processes interacting with one of these files at the same time. This is necessary because we have at least 4 processes that work with these files: the CLI and the main-, upload- and helios-thread. + +``` diff --git a/packages/docs/docs/user-guide/functionality.mdx b/packages/docs/docs/user-guide/functionality.mdx new file mode 100644 index 00000000..2c78ab80 --- /dev/null +++ b/packages/docs/docs/user-guide/functionality.mdx @@ -0,0 +1,13 @@ +--- +sidebar_position: 1 +--- + +# Functionality + +Measurements with an EM27/SUN require you to run CamTracker - the software that tracks the sun position and operates the mirrors accordingly - and OPUS - the software that sends commands to the EM27/SUN and collects the output data into interferogram files. + + + +Based on certain conditions - time, sun angle, or sun condition (see [Helios](/docs/user-guide/tum-plc-and-helios)) - Pyra decides whether to perform measurements or not. + +Pyra can handle both interfaces to start and stop measurement activity. This can either be done manually (clicking a button in the GUI), automatically or via a CLI command. In addition, Pyra monitors the measurement process and operating system stability (disk space, CPU usage, etc.), permanently logs its activity, and sends out emails when errors occur/have been resolved. diff --git a/packages/docs/docs/user-guide/setup.mdx b/packages/docs/docs/user-guide/setup.mdx new file mode 100644 index 00000000..5cb6f887 --- /dev/null +++ b/packages/docs/docs/user-guide/setup.mdx @@ -0,0 +1,194 @@ +--- +sidebar_position: 2 +sidebar_label: Setup +--- + +# Hot to set it up + +## Software Requirements + +:::note + +The following manual steps are only required at the initial system setup. All future updates and new installations of Pyra can be done with the [Pyra Setup Tool](#pyra-setup-tool). + +::: + +:::tip + +In some cases, you might get an error message saying that "executing `.ps1` scripts is not allowed due to an ExecutionPolicy". This can be solved with the following command (credits to https://stackoverflow.com/a/49112322/8255842): + +``` +Set-ExecutionPolicy -Scope CurrentUser -ExecutionPolicy Unrestricted +``` + +::: + +### OPUS and CamTracker + +Integration tests are done using **OPUS 7.8.44** and **CamTracker 3.9.2015.02.03**. + +### Python 3.10 + +https://www.python.org/ + +Your system's python3.10 interpreter should be available as shell environment variable `python`. Therefore, you need to add system environment variables to point the `python` command (and `pip`) to the Python3.10 interpreter by checking the box marked in the image below. + + + +
+ + Incomplete installation: + +
+ +``` +$ python --version +Python was not found; run without arguments to install +from the Microsoft Store, or disable this shortcut from +Settings > Manage App Execution Aliases. +``` + +
+ + Complete installation: + +
+ +``` +$ python --version +Python 3.10.x +``` + +If your `python` command doesn't resolve to the installed version, please look at the section ["Add Environment Paths"](#add-environment-paths) and add the path ".../Python310" and "Python310/Scripts" where you just installed Python. + +### Install Poetry + +https://python-poetry.org/ + +### Git & GitHub CLI + +https://git-scm.com/ and https://cli.github.com/ + +:::info + +Git and the GitHub CLI are used by the Pyra Setup Tool. + +::: + +## Pyra Setup Tool + +The [**Pyra Setup Tool**](https://github.com/tum-esm/pyra-setup-tool) can be used to install and migrate between Pyra versions. The tool looks for the "Documents" directory on your system and generates a directory structure like this: + +``` +📁 + 📁 pyra + 📁 pyra-4.0.5 + 📁 pyra-4.0.6 + 📁 ... +``` + +On the first time, clone the setup tool repo: + +```bash +cd %userprofile%/Documents +gh repo clone tum-esm/pyra-setup-tool +``` + +The setup tool uses the `colorama` library: + +```bash +pip install colorama +``` + +**Run the tool with (from this point on it will auto-update itself):** + +```bash +cd %userprofile%/Documents/pyra-setup-tool +python run.py +``` + +The setup tool automates the following steps: + +1. Download each release's codebase +2. Install all python dependencies into the global python interpreter environment +3. Download and runs the GUI installer +4. Create desktop shortcuts to the `pyra-x.y.z` directory +5. (Optional) Migrate the `config.json` file to keep the previous settings + +## Pyra CLI Command + +You need to actively tell Windows about the `pyra-cli` command. When using the installer, it will tell you which path to [add to the environment variables](#add-environment-paths) on every install process. + + + +:::note + +The edit of the path variable is only required once per Pyra computer - when setting it up initially. + +::: + +## Add Environment Paths + +1. Look for the "Edit the system environment variables" utility + + + +2. Click on "Environment Variables" + + + +3. Select "PATH" in the system section and click on "Edit" + + + +4. Add the required paths to the list + +## Releases + +All Pyra releases can be found here: https://github.com/tum-esm/pyra/releases. Please only use the releases starting with `4.0.5`. Older versions are experimental. + +## Error Email Setup + +For Pyra to send you error emails (see [Usage section](/docs/user-guide/usage#error-emails)), you need an email account that allows this kind of connection. + +We are using Gmail for this. You have to use an "App Password" for Pyra, which requires 2FA for your Google Account. Please refer to this article on how to set up an "App Password": https://support.google.com/accounts/answer/185833. Inside the config tab, you have to add this "App Password" to receive emails: + + + +:::note + +There is a test script to test whether email sending works. See [/docs/developer-guide/testing-and-ci](/docs/developer-guide/testing-and-ci). + +We plan to add a button "test emailing" to the config tab: https://github.com/tum-esm/pyra/issues/109 + +::: + +:::caution + +The "Gmail password" and the "app password" are not the same. + +Whenever changing/resetting the "Gmail password", all "app passwords" will be invalidated. + +::: + +## Upload + +You need a server running Linux that Pyra can connect to via SSH - using a password. The server has to have `python3.10` installed. + +In the config.upload section, you can set connection details, and source and destination directories for your interferograms. How the upload works is described [here](/docs/user-guide/upload) in detail. diff --git a/packages/docs/docs/user-guide/tum-plc-and-helios.mdx b/packages/docs/docs/user-guide/tum-plc-and-helios.mdx new file mode 100644 index 00000000..7dddff59 --- /dev/null +++ b/packages/docs/docs/user-guide/tum-plc-and-helios.mdx @@ -0,0 +1,52 @@ +--- +sidebar_position: 5 +--- + +# TUM PLC & Helios + +The hardware for the TUM weather protection enclosure and Helios setup is not available to buy off the shelf yet. Please [contact us](/docs/contact) if you are interested in acquiring our hardware. + + + +The TUM hardware used by [MUCCnet](https://atmosphere.ei.tum.de/) has been described in [Dietrich et al. 2021 (https://doi.org/10.5194/amt-14-1111-2021)](https://doi.org/10.5194/amt-14-1111-2021). + +## What does Helios do? + +Helios evaluates the current sun state - whether direct or diffuse sunlight is present. EM27/SUN applications require direct sunlight for measurement data to be useful. Additionally, CamTracker will lose track of the sun with very diffuse light conditions and requires a restart. + +The Helios hardware is made up of a transparent globe with black stripes glued to it and a translucent milky glass with a camera pointing upwards attached below. + +
+ +
+ +Helios will periodically take images with that camera, process them, and evaluate shadow conditions. The processing will detect the lens circle and cut off the outer 10% of the radius - a lot of unwanted shadows can occur on the edges due to dirt from the outside. Finally, it will use a canny edge filter and count the pixels where "fast transitions between light and dark" can be found. If the pixel count is above a certain threshold (configurable), the sunlight conditions are categorized as "good". + +Example images in **bad** conditions: + +
+ + +
+ +Example images in **good** conditions: + +
+ + +
diff --git a/packages/docs/docs/user-guide/upload.mdx b/packages/docs/docs/user-guide/upload.mdx new file mode 100644 index 00000000..99054d85 --- /dev/null +++ b/packages/docs/docs/user-guide/upload.mdx @@ -0,0 +1,61 @@ +--- +sidebar_position: 4 +sidebar_label: Upload +--- + +# The Upload Process + +## Interferograms Directory Structure + +We have set up our OPUS macro files to produce a directory structure like this: + +``` +📁 + 📁 YYYYMMDD + 📄 stationid-YYYYMMDD.0001 + 📄 stationid-YYYYMMDD.0002 + 📄 ... + 📁 YYYYMMDD + 📄 stationid-YYYYMMDD.0001 + 📄 stationid-YYYYMMDD.0002 + 📄 ... +``` + +:::note + +When using [Helios](/docs/user-guide/tum-plc-and-helios), saved images will be stored inside `/logs/helios/` in the same directory structure as the interferograms output directory. This is why the upload can be used for both types of data. + +We will expand this to be useable for an arbitrary number of directories in the future: See [GitHub](https://github.com/tum-esm/pyra/issues?q=is%3Aissue+is%3Aopen+label%3A%22Update%3A+Upload+Improvements%22). + +::: + +## How the Upload works + +The upload uses an `upload-meta.json` file in each `YYYYMMDD` directory to save the upload state. You should not modify this file or the `YYYYMMDD` directories manually! Example file: + +```json +{ + "complete": false, + "fileList": ["file 1", "file 2", "..."], + "createdTime": 0, + "lastModifiedTime": 0 +} +``` + +The upload can handle interruptions and continue where it was stopped. After uploading each directory, Pyra will calculate a checksum locally and remotely - this is why the server needs to have Python 3.10 installed. Only when the checksums match, the `upload-meta.json` will get a `complete = true` indicator. + +The idea of the `complete=true` flag is that the post-processing should only consider data where the upload is complete. + +## Measures to ensure upload integrity + +1. The `complete=true` flag will also only be set, when the checksums match. + +2. The local files will only be deleted when the checksums of the local and remote directory are equal: Every missing, additional, or modified file in the `fileList` will change the checksum. + +3. We wrote a test script that generates a bunch of sample directories and sample files, runs the upload, and checks the final upload state. See [/docs/developer-guide/testing-and-ci](/docs/developer-guide/testing-and-ci). + +:::note + +More details about the indiviual upload steps can be found [in the developer guide](/docs/developer-guide/upload-in-detail). + +::: diff --git a/packages/docs/docs/user-guide/usage.mdx b/packages/docs/docs/user-guide/usage.mdx new file mode 100644 index 00000000..26980fb9 --- /dev/null +++ b/packages/docs/docs/user-guide/usage.mdx @@ -0,0 +1,189 @@ +--- +sidebar_position: 3 +sidebar_label: Usage +--- + +# How to use it + +## Parts of Pyra + +The three parts of Pyra are: + +- **Pyra Core:** Running in the background, looping over all automation steps infinitely in a defined interval. +- **Pyra CLI:** Command Line Interface (CLI) used to interact with Pyra Core +- **Pyra UI:** Graphical user Interface (GUI) used to interact with Pyra Core and send Pyra CLI commands + +## Pyra Core + +For a description of how the core works, please read the [Developer Guide](/docs/category/developer-guide). + +## Graphical user Interface (GUI) + +This is how the GUI looks. The tab "PLC Controls" only appears when you have configured the [TUM PLC](/docs/user-guide/tum-plc-and-helios). + + + +When changes are made to the `config.json` file directly (not from the GUI), a popup will appear, telling you to reload the window: + + + +:::note + +We are currently experiencing a bug on some systems that the "config has changed, reload required" popup shows up when changes were made through the GUI. Also, the popup appears multiple times. This should be resolved in the future. + +The issue progress can be tracked here: https://github.com/tum-esm/pyra/issues/106 + +::: + +## Logs + +Pyra will store all of its activity in log files. The files `info.log` and `debug.log` will only contain logs from the past hour. Older log lines will be archived periodically to keep the main log files easy to parse. + +``` +📁 + 📁 pyra + 📁 pyra-x.y.z + 📁 logs + 📄 info.log + 📄 debug.log + 📁 archive + 📄 YYYYMMDD-info.log + 📄 YYYYMMDD-debug.log + 📄 ... +``` + +Inside the Logs tab, the content from the log files will be fetched every 10 seconds. The debug level includes more information. The log fetching can be paused (on the "live" button) for analyzing logs in detail. There is a button that opens the `pyra/pyra-x.y.z/logs` folder in the file explorer. + + + +## Measurement Modes and Triggers + +The **measurement decision** (whether measurements should run or not) depends on the **measurement mode**: + +- **Automatic mode:** Measurement decision is made based on defined triggers (see below) +- **Manual mode:** A start/stop button for manual control +- **CLI mode:** The config contains a field, where the CLI can add a decision result + +:::tip + +CLI mode can be used when you have already built a system that evaluates measurement conditions and want to use Pyra for the rest of the operation. Respective CLI commands can be found in the [next section](#command-line-interface-cli). + +::: + +In the automation tab, Pyra's measurement mode can be selected. + + + +In the configuration tab, you can select measurement triggers that should be considered in automatic mode + + + +:::note + +**Helios** is our module to determine whether direct sunlight (required by the EM27/SUN) is present or not. Read about it [here](/docs/user-guide/tum-plc-and-helios). + +::: + +## Command Line Interface (CLI) + +:::tip + +Everything that can be seen/clicked in the GUI can also be read/written via the CLI. + +::: + +### Help Menu + +Top-level help menu: + +```bash +pyra-cli --help +# Usage: pyra-cli [OPTIONS] COMMAND [ARGS]... +# +# Options: +# --help Show this message and exit. +# +# Commands: +# config +# core +# logs +# plc +# remove-filelocks Remove all filelocks. +# state +``` + +The help menu of individual command groups: + +```bash +pyra-cli config --help +# Usage: pyra-cli config [OPTIONS] COMMAND [ARGS]... +# +# Options: +# --help Show this message and exit. +# +# Commands: +# get Read the current config.json file. +# update Set the config.json file. +# validate Validate the current config.json file. +``` + +The help menu of individual commands: + +```bash +pyra-cli config update --help +# Usage: pyra-cli config update [OPTIONS] [CONTENT] +# +# Set config. Pass the JSON directly or via a file path. Only a subset of the +# required config variables has to be passed. The non-occurring values will be +# reused from the current config. +# +# The required schema can be found in the documentation. +# +# Options: +# --help Show this message and exit. +``` + +### Config Update + +Running `pyra-cli config update "{\"general\":{\"seconds_per_core_interval\": 20}}"` will update the number of seconds Pyra spends in one loop. The same command can be achieved in Python without all the escaping done manually: + +```python +import json +import os + +update = {"seconds_per_core_interval": 20} +os.system(f"pyra-cli config update {json.dumps(update)}") +``` + +Pyra will validate the structure of the update and enforce some rules on the parameter values (value range, the file exists, etc.) + + + +The developer docs contain a [full list of schema and value requirements](/docs/developer-guide/internal-interfaces) for the config file. + +## Error Emails + +Whenever Pyra encounters any errors, it sends out emails to a list of recipients. An "error resolved" email helps with self-resolving issues and team communication - so that others get notified when the problem is not present anymore. + +**When errors occur:** + + + +**When errors are resolved:** + + + +:::note + +The "CoverError" comes from the TUM PLC Module controlling our weather protection enclosure. + +::: diff --git a/packages/docs/docusaurus.config.js b/packages/docs/docusaurus.config.js new file mode 100644 index 00000000..7cd98f36 --- /dev/null +++ b/packages/docs/docusaurus.config.js @@ -0,0 +1,93 @@ +// @ts-check +// Note: type annotations allow type checking and IDEs autocompletion + +const lightCodeTheme = require('prism-react-renderer/themes/github'); +const darkCodeTheme = require('prism-react-renderer/themes/dracula'); + +async function createConfig() { + const mdxMermaid = await import('mdx-mermaid'); + + /** @type {import('@docusaurus/types').Config} */ + return { + title: 'PYRA 4', + tagline: 'operate an EM27 station autonomously', + staticDirectories: ['static'], + url: 'https://your-docusaurus-test-site.com', + baseUrl: '/', + onBrokenLinks: 'throw', + onBrokenMarkdownLinks: 'throw', + favicon: 'img/favicon.ico', + + // GitHub pages deployment config. + organizationName: 'tum-esm', + projectName: 'pyra', + + // Even if you don't use internalization, you can use this field to set useful + // metadata like html lang. + i18n: { + defaultLocale: 'en', + locales: ['en'], + }, + + presets: [ + [ + 'classic', + /** @type {import('@docusaurus/preset-classic').Options} */ + ({ + docs: { + sidebarPath: require.resolve('./sidebars.js'), + // Remove this to remove the "edit this page" links. + editUrl: + 'https://github.com/tum-esm/pyra/tree/main/website/', + remarkPlugins: [mdxMermaid.default], + }, + theme: { + customCss: [ + require.resolve('./src/css/ifm-settings.css'), + require.resolve('./src/css/navigation.css'), + require.resolve('./src/css/markdown.css'), + require.resolve('./src/css/admonitions.css'), + ], + }, + }), + ], + ], + + themeConfig: + /** @type {import('@docusaurus/preset-classic').ThemeConfig} */ + ({ + colorMode: { + defaultMode: 'light', + disableSwitch: true, + respectPrefersColorScheme: false, + }, + navbar: { + title: 'PYRA 4', + logo: { + alt: 'PYRA 4 Logo', + src: 'img/logo.svg', + width: 32, + height: 32, + }, + items: [ + { + href: 'https://github.com/tum-esm/pyra', + position: 'right', + className: 'header-github-link', + ariaLabel: 'GitHub repository', + }, + ], + }, + footer: { + style: 'dark', + copyright: `© ${new Date().getFullYear()} - Associate Professorship of Environmental Sensing and Modeling - Technical University of Munich`, + }, + prism: { + theme: lightCodeTheme, + darkTheme: darkCodeTheme, + }, + }), + }; +} + +module.exports = createConfig; diff --git a/packages/docs/package.json b/packages/docs/package.json new file mode 100644 index 00000000..2849d8c0 --- /dev/null +++ b/packages/docs/package.json @@ -0,0 +1,51 @@ +{ + "name": "docs", + "version": "0.0.0", + "private": true, + "scripts": { + "docusaurus": "docusaurus", + "develop": "docusaurus start", + "build": "docusaurus build", + "swizzle": "docusaurus swizzle", + "deploy": "docusaurus deploy", + "clear": "docusaurus clear", + "serve": "docusaurus serve", + "write-translations": "docusaurus write-translations", + "write-heading-ids": "docusaurus write-heading-ids", + "typecheck": "tsc" + }, + "dependencies": { + "@docusaurus/core": "^2.1.0", + "@docusaurus/preset-classic": "^2.1.0", + "@mdx-js/react": "^1.6.22", + "clsx": "^1.2.1", + "mdx-mermaid": "^1.3.2", + "mermaid": "^9.1.6", + "prism-react-renderer": "^1.3.5", + "react": "^17.0.2", + "react-dom": "^17.0.2" + }, + "devDependencies": { + "@docusaurus/module-type-aliases": "^2.1.0", + "@tsconfig/docusaurus": "^1.0.5", + "autoprefixer": "^10.4.8", + "postcss": "^8.4.16", + "tailwindcss": "^3.1.8", + "typescript": "^4.7.4" + }, + "browserslist": { + "production": [ + ">0.5%", + "not dead", + "not op_mini all" + ], + "development": [ + "last 1 chrome version", + "last 1 firefox version", + "last 1 safari version" + ] + }, + "engines": { + "node": ">=16.14" + } +} diff --git a/packages/docs/postcss.config.js b/packages/docs/postcss.config.js new file mode 100644 index 00000000..67cdf1a5 --- /dev/null +++ b/packages/docs/postcss.config.js @@ -0,0 +1,6 @@ +module.exports = { + plugins: { + tailwindcss: {}, + autoprefixer: {}, + }, +}; diff --git a/packages/docs/sidebars.js b/packages/docs/sidebars.js new file mode 100644 index 00000000..507d67a8 --- /dev/null +++ b/packages/docs/sidebars.js @@ -0,0 +1,8 @@ +// @ts-check + +/** @type {import('@docusaurus/plugin-content-docs').SidebarsConfig} */ +const sidebars = { + tutorialSidebar: [{ type: 'autogenerated', dirName: '.' }], +}; + +module.exports = sidebars; diff --git a/packages/docs/src/components/github-label.tsx b/packages/docs/src/components/github-label.tsx new file mode 100644 index 00000000..10813dac --- /dev/null +++ b/packages/docs/src/components/github-label.tsx @@ -0,0 +1,9 @@ +import React from 'react'; + +export default function GitHubLabel(props: { text: string }): JSX.Element { + return ( + + {props.text} + + ); +} diff --git a/packages/docs/src/components/track-on-github.tsx b/packages/docs/src/components/track-on-github.tsx new file mode 100644 index 00000000..e34de686 --- /dev/null +++ b/packages/docs/src/components/track-on-github.tsx @@ -0,0 +1,21 @@ +import React from 'react'; + +import GitHubLabel from '@site/src/components/github-label'; + +export default function TrackOnGitHub(props: { + url: string; + text: string; + releaseDate?: string; +}): JSX.Element { + return ( +
+ + Track on GitHub + + Release Date: {props.releaseDate || 'TBD'} +
+ ); +} diff --git a/packages/docs/src/css/admonitions.css b/packages/docs/src/css/admonitions.css new file mode 100644 index 00000000..432ab0cf --- /dev/null +++ b/packages/docs/src/css/admonitions.css @@ -0,0 +1,76 @@ +.theme-admonition { + @apply tw-rounded tw-shadow-none tw-border-0; +} + +.theme-admonition-note, +.theme-admonition-note p { + @apply tw-bg-gray-150 tw-text-gray-800; +} + +.theme-admonition-note svg { + @apply !tw-fill-gray-500; +} + +.theme-admonition-tip, +.theme-admonition-tip p { + @apply tw-bg-green-200 tw-text-green-900; +} +.theme-admonition-tip svg { + @apply !tw-fill-green-500; +} + +.theme-admonition-info, +.theme-admonition-info p { + @apply tw-bg-blue-150 tw-text-blue-900; +} +.theme-admonition-info svg { + @apply !tw-fill-blue-500; +} + +.theme-admonition-caution, +.theme-admonition-caution p { + @apply tw-bg-amber-200 tw-text-amber-900; +} +.theme-admonition-caution svg { + @apply !tw-fill-amber-500; +} + +.theme-admonition-danger, +.theme-admonition-danger p { + @apply tw-bg-red-200 tw-text-red-900; +} +.theme-admonition-danger svg { + @apply !tw-fill-red-500; +} + +/* code blocks or pills inside admonitions */ + +.theme-admonition-note .theme-code-block pre, +.theme-admonition-note p code, +.theme-admonition-note li code { + @apply !tw-bg-gray-300; +} + +.theme-admonition-tip .theme-code-block pre, +.theme-admonition-tip p code, +.theme-admonition-tip li code { + @apply !tw-bg-green-300; +} + +.theme-admonition-info .theme-code-block pre, +.theme-admonition-info p code, +.theme-admonition-info li code { + @apply !tw-bg-blue-300; +} + +.theme-admonition-caution .theme-code-block pre, +.theme-admonition-caution p code, +.theme-admonition-caution li code { + @apply !tw-bg-amber-300; +} + +.theme-admonition-danger .theme-code-block pre, +.theme-admonition-danger p code, +.theme-admonition-danger li code { + @apply !tw-bg-red-300; +} diff --git a/packages/docs/src/css/ifm-settings.css b/packages/docs/src/css/ifm-settings.css new file mode 100644 index 00000000..060c289f --- /dev/null +++ b/packages/docs/src/css/ifm-settings.css @@ -0,0 +1,21 @@ +@tailwind components; +@tailwind utilities; + +/* You can override the default Infima variables here. */ +:root { + --ifm-color-primary-lightest: #84c5f4; /* blue-200 */ + --ifm-color-primary-lighter: #62b0e8; /* blue-300 */ + --ifm-color-primary-light: #4098d7; /* blue-400 */ + --ifm-color-primary: #2680c2; /* blue-500 */ + --ifm-color-primary-dark: #186faf; /* blue-600 */ + --ifm-color-primary-darker: #0f609b; /* blue-700 */ + --ifm-color-primary-darkest: #0a558c; /* blue-800 */ + + --ifm-link-color: #186faf; /* blue-600 */ + --ifm-font-size-base: 1.2rem; + --ifm-line-height-base: 1.5rem; + + --ifm-transition-fast: 100ms; + + --ifm-spacing-horizontal: 1rem; +} diff --git a/packages/docs/src/css/markdown.css b/packages/docs/src/css/markdown.css new file mode 100644 index 00000000..ee30b6e6 --- /dev/null +++ b/packages/docs/src/css/markdown.css @@ -0,0 +1,41 @@ +h1 { + @apply tw-text-4xl !tw-mt-0 !tw-mb-4; +} + +h2 { + @apply tw-text-3xl !tw-mt-0 !tw-mb-3; +} + +h2:not(:first-of-type) { + @apply !tw-mt-10; +} + +h3 { + @apply tw-text-2xl !tw-mt-6 !tw-mb-2; +} + +h1, +h2, +h3, +p { + @apply tw-text-gray-800; +} + +p { + @apply tw-text-justify; +} + +.theme-code-block { + @apply !tw-shadow-none; +} + +.theme-code-block pre { + @apply !tw-bg-gray-150; +} + +p code, +li code, +h2 code, +h3 code { + @apply tw-border-0 tw-px-1 tw-py-0.5 tw-rounded tw-bg-gray-150 tw-text-gray-800; +} diff --git a/packages/docs/src/css/navigation.css b/packages/docs/src/css/navigation.css new file mode 100644 index 00000000..c38d6983 --- /dev/null +++ b/packages/docs/src/css/navigation.css @@ -0,0 +1,93 @@ +.header-github-link:hover { + opacity: 0.6; +} + +.header-github-link:before { + content: ''; + width: 24px; + height: 24px; + display: flex; + background: url("data:image/svg+xml,%3Csvg viewBox='0 0 24 24' xmlns='http://www.w3.org/2000/svg'%3E%3Cpath d='M12 .297c-6.63 0-12 5.373-12 12 0 5.303 3.438 9.8 8.205 11.385.6.113.82-.258.82-.577 0-.285-.01-1.04-.015-2.04-3.338.724-4.042-1.61-4.042-1.61C4.422 18.07 3.633 17.7 3.633 17.7c-1.087-.744.084-.729.084-.729 1.205.084 1.838 1.236 1.838 1.236 1.07 1.835 2.809 1.305 3.495.998.108-.776.417-1.305.76-1.605-2.665-.3-5.466-1.332-5.466-5.93 0-1.31.465-2.38 1.235-3.22-.135-.303-.54-1.523.105-3.176 0 0 1.005-.322 3.3 1.23.96-.267 1.98-.399 3-.405 1.02.006 2.04.138 3 .405 2.28-1.552 3.285-1.23 3.285-1.23.645 1.653.24 2.873.12 3.176.765.84 1.23 1.91 1.23 3.22 0 4.61-2.805 5.625-5.475 5.92.42.36.81 1.096.81 2.22 0 1.606-.015 2.896-.015 3.286 0 .315.21.69.825.57C20.565 22.092 24 17.592 24 12.297c0-6.627-5.373-12-12-12' style='fill: rgb(15, 23, 42);'/%3E%3C/svg%3E") + no-repeat; +} + +.menu__link { + @apply tw-text-sm tw-leading-tight; +} + +.menu__link:not(.menu__link--active), +.menu__list-item-collapsible:not(.menu__list-item-collapsible--active) { + @apply tw-text-gray-600 tw-font-medium; + @apply hover:!tw-bg-gray-100 hover:tw-text-gray-800; +} + +.menu__link--active, +.menu__list-item-collapsible--active { + @apply !tw-bg-gray-200 tw-text-gray-900 tw-font-bold; + @apply hover:!tw-bg-gray-100 hover:tw-text-gray-800; +} + +.menu__caret:before { + background: url('/img/icons/icon-cheveron-up.svg') 50% / 2rem 2rem !important; +} + +.breadcrumbs__item:not(:last-child):after { + background: url('/img/icons/icon-cheveron-up.svg') center / 1.5rem 1.5rem; + transform: rotate(90deg); + @apply tw-opacity-100 tw-ml-0; +} + +.breadcrumbs__item .breadcrumbs__link, +.breadcrumbs__item--active .breadcrumbs__link { + @apply tw-bg-white hover:tw-bg-gray-200 tw-rounded tw-px-1.5 tw-py-0 tw-font-medium tw-text-gray-900 tw-mx-0; +} + +.breadcrumbHomeIcon_node_modules-\@docusaurus-theme-classic-lib-theme-DocBreadcrumbs-styles-module { + transform: translateY(1.5px); +} + +.pagination-nav__link { + @apply tw-bg-gray-100 tw-border-0 hover:tw-bg-gray-300; + @apply tw-text-gray-800 hover:tw-text-gray-900 tw-rounded; +} +.pagination-nav__sublabel { + @apply tw-text-xs tw-font-normal tw-uppercase; +} +.pagination-nav__label:before, +.pagination-nav__label:after { + @apply tw-hidden; +} + +article .card { + @apply !tw-shadow-none tw-bg-gray-100 tw-rounded tw-border-0 hover:tw-bg-gray-300; + @apply tw-text-gray-800 hover:tw-text-gray-900; + @apply !tw-px-6 !tw-py-4; +} + +/* fixes for docusaurus itself */ +article .col:nth-child(odd) { + @apply !tw-pr-2; +} +article .col:nth-child(even) { + @apply !tw-pl-2; +} + +article .row article { + @apply !tw-mb-4 !tw-py-0; +} + +.footer--dark { + --ifm-footer-background-color: #0b111f; /* slate-950 */ + --ifm-footer-color: white; + --ifm-footer-padding-vertical: 1rem; + + @apply tw-text-sm tw-font-normal; +} + +.theme-doc-footer-edit-meta-row { + @apply tw-text-xs tw-font-medium tw-underline; +} + +.theme-doc-footer-edit-meta-row svg { + @apply tw-hidden; +} diff --git a/packages/docs/src/pages/index.module.css b/packages/docs/src/pages/index.module.css new file mode 100644 index 00000000..9f71a5da --- /dev/null +++ b/packages/docs/src/pages/index.module.css @@ -0,0 +1,23 @@ +/** + * CSS files with the .module.css suffix will be treated as CSS modules + * and scoped locally. + */ + +.heroBanner { + padding: 4rem 0; + text-align: center; + position: relative; + overflow: hidden; +} + +@media screen and (max-width: 996px) { + .heroBanner { + padding: 2rem; + } +} + +.buttons { + display: flex; + align-items: center; + justify-content: center; +} diff --git a/packages/docs/src/pages/index.tsx b/packages/docs/src/pages/index.tsx new file mode 100644 index 00000000..7cc32aed --- /dev/null +++ b/packages/docs/src/pages/index.tsx @@ -0,0 +1,6 @@ +import React from 'react'; +import { Redirect } from 'react-router-dom'; + +export default function Home() { + return ; +} diff --git a/packages/docs/static/.nojekyll b/packages/docs/static/.nojekyll new file mode 100644 index 00000000..e69de29b diff --git a/docs/architecture.excalidraw b/packages/docs/static/drawings/exaclidraw-files/architecture.excalidraw similarity index 98% rename from docs/architecture.excalidraw rename to packages/docs/static/drawings/exaclidraw-files/architecture.excalidraw index 92778957..b471b677 100644 --- a/docs/architecture.excalidraw +++ b/packages/docs/static/drawings/exaclidraw-files/architecture.excalidraw @@ -36,8 +36,8 @@ }, { "type": "text", - "version": 1221, - "versionNonce": 1023397162, + "version": 1222, + "versionNonce": 705900240, "isDeleted": false, "id": "fKCQCj-6WAy6HvoUvtK4T", "fillStyle": "hachure", @@ -51,18 +51,18 @@ "strokeColor": "#000000", "backgroundColor": "transparent", "width": 318, - "height": 25, + "height": 23, "seed": 484172835, "groupIds": [], "strokeSharpness": "sharp", "boundElements": [], - "updated": 1658444750539, + "updated": 1662821005512, "link": null, "locked": false, "fontSize": 20, "fontFamily": 1, "text": "EnclosureControl", - "baseline": 18, + "baseline": 17, "textAlign": "center", "verticalAlign": "middle", "containerId": "ShBo1Sm_7CzJJxlO3yah_", @@ -178,8 +178,8 @@ }, { "type": "text", - "version": 1484, - "versionNonce": 1868171946, + "version": 1485, + "versionNonce": 1811239984, "isDeleted": false, "id": "aC9PjfjyrECSfTGeo00W5", "fillStyle": "hachure", @@ -193,18 +193,18 @@ "strokeColor": "#000000", "backgroundColor": "transparent", "width": 318, - "height": 25, + "height": 23, "seed": 1058632749, "groupIds": [], "strokeSharpness": "sharp", "boundElements": [], - "updated": 1658444750539, + "updated": 1662821014263, "link": null, "locked": false, "fontSize": 20, "fontFamily": 1, "text": "OpusMeasurements", - "baseline": 18, + "baseline": 17, "textAlign": "center", "verticalAlign": "middle", "containerId": "1smJKBCX54odo3jVzMZiX", @@ -251,8 +251,8 @@ }, { "type": "text", - "version": 1377, - "versionNonce": 97985898, + "version": 1379, + "versionNonce": 798079696, "isDeleted": false, "id": "fGHTfIO-T_Qo_TTKXVtOT", "fillStyle": "hachure", @@ -262,22 +262,22 @@ "opacity": 100, "angle": 0, "x": -914.502172061866, - "y": -932.6686028200397, + "y": -932.6686028200395, "strokeColor": "#000000", "backgroundColor": "transparent", "width": 318, - "height": 25, + "height": 23, "seed": 635651171, "groupIds": [], "strokeSharpness": "sharp", "boundElements": [], - "updated": 1658444750539, + "updated": 1662821010081, "link": null, "locked": false, "fontSize": 20, "fontFamily": 1, "text": "SunTracking", - "baseline": 18, + "baseline": 17, "textAlign": "center", "verticalAlign": "middle", "containerId": "dzTAQSEVansqykgOJpAKz", @@ -760,8 +760,8 @@ }, { "type": "arrow", - "version": 2292, - "versionNonce": 523050422, + "version": 2293, + "versionNonce": 712116272, "isDeleted": false, "id": "CPaaq-ij6FhAkg3t0-kbo", "fillStyle": "hachure", @@ -780,10 +780,14 @@ "groupIds": [], "strokeSharpness": "round", "boundElements": [], - "updated": 1658444750539, + "updated": 1662821018532, "link": null, "locked": false, - "startBinding": null, + "startBinding": { + "elementId": "DkCAI46W3isWOie6ptIVF", + "focus": -0.12457529786233187, + "gap": 23.27015070846744 + }, "endBinding": { "elementId": "H1nAS8pFgIRhrAh4OomHS", "focus": 0.02178642929531241, @@ -3304,8 +3308,8 @@ }, { "type": "diamond", - "version": 1603, - "versionNonce": 797399850, + "version": 1606, + "versionNonce": 957544656, "isDeleted": false, "id": "DkCAI46W3isWOie6ptIVF", "fillStyle": "hachure", @@ -3315,7 +3319,7 @@ "opacity": 100, "angle": 0, "x": -915.6791073549623, - "y": -249.5466245979278, + "y": -249.4216245979278, "strokeColor": "#000000", "backgroundColor": "#ced4da", "width": 328, @@ -3343,16 +3347,24 @@ { "type": "text", "id": "R2T6kMw4tT30ValAe5rwt" + }, + { + "id": "CPaaq-ij6FhAkg3t0-kbo", + "type": "arrow" + }, + { + "id": "n2VM_CVvR_hpVvgP7ykpn", + "type": "arrow" } ], - "updated": 1658444750540, + "updated": 1662821018532, "link": null, "locked": false }, { "type": "text", - "version": 1702, - "versionNonce": 1938736246, + "version": 1703, + "versionNonce": 808185040, "isDeleted": false, "id": "R2T6kMw4tT30ValAe5rwt", "fillStyle": "hachure", @@ -3362,7 +3374,7 @@ "opacity": 100, "angle": 0, "x": -910.6791073549623, - "y": -108.5466245979278, + "y": -108.4216245979278, "strokeColor": "#000000", "backgroundColor": "transparent", "width": 318, @@ -3371,7 +3383,7 @@ "groupIds": [], "strokeSharpness": "sharp", "boundElements": [], - "updated": 1658444750540, + "updated": 1662821018494, "link": null, "locked": false, "fontSize": 20, @@ -3419,8 +3431,8 @@ }, { "type": "arrow", - "version": 2827, - "versionNonce": 560645558, + "version": 2828, + "versionNonce": 694256176, "isDeleted": false, "id": "n2VM_CVvR_hpVvgP7ykpn", "fillStyle": "hachure", @@ -3439,11 +3451,15 @@ "groupIds": [], "strokeSharpness": "round", "boundElements": [], - "updated": 1658444750540, + "updated": 1662821018532, "link": null, "locked": false, "startBinding": null, - "endBinding": null, + 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a/docs/assets/pyra-4-icon-256.png b/packages/docs/static/img/favicon.ico similarity index 100% rename from docs/assets/pyra-4-icon-256.png rename to packages/docs/static/img/favicon.ico diff --git a/packages/docs/static/img/icons/icon-cheveron-up.svg b/packages/docs/static/img/icons/icon-cheveron-up.svg new file mode 100644 index 00000000..7e995c03 --- /dev/null +++ b/packages/docs/static/img/icons/icon-cheveron-up.svg @@ -0,0 +1 @@ + \ No newline at end of file diff --git a/packages/docs/static/img/logo.svg b/packages/docs/static/img/logo.svg new file mode 100644 index 00000000..b39671a6 --- /dev/null +++ b/packages/docs/static/img/logo.svg @@ -0,0 +1,14 @@ + + + + + + + + + + + + + + diff --git a/docs/assets/pyra-4-icon-1024.png b/packages/docs/static/logo/pyra-4-icon-1024.png similarity index 100% rename from docs/assets/pyra-4-icon-1024.png rename to packages/docs/static/logo/pyra-4-icon-1024.png diff --git a/packages/docs/static/logo/pyra-4-icon-256.png b/packages/docs/static/logo/pyra-4-icon-256.png new file mode 100644 index 00000000..69ae2503 Binary files /dev/null and b/packages/docs/static/logo/pyra-4-icon-256.png differ diff --git a/docs/assets/pyra-4-icon-512.png b/packages/docs/static/logo/pyra-4-icon-512.png similarity index 100% rename from docs/assets/pyra-4-icon-512.png rename to packages/docs/static/logo/pyra-4-icon-512.png diff --git a/docs/assets/pyra-4-icon.svg b/packages/docs/static/logo/pyra-4-icon.svg similarity index 100% rename from docs/assets/pyra-4-icon.svg rename to packages/docs/static/logo/pyra-4-icon.svg diff --git a/packages/docs/tailwind.config.js b/packages/docs/tailwind.config.js new file mode 100644 index 00000000..5fa61897 --- /dev/null +++ b/packages/docs/tailwind.config.js @@ -0,0 +1,69 @@ +// prettier-ignore + +const colors = require('tailwindcss/colors') +const customColors = { + gray: { + 50: '#f8fafc', + 75: '#f4f7fa', + 100: '#f1f5f9', + 150: '#e9eef4', + 200: '#e2e8f0', + 300: '#cbd5e1', + 350: '#afbccc', + 400: '#94a3b8', + 500: '#64748b', + 600: '#475569', + 700: '#334155', + 750: '#283548', + 800: '#1e293b', + 850: '#162032', + 900: '#0f172a', + 950: '#0B111F', + }, + + red: colors.red, + green: colors.green, + yellow: colors.yellow, + + blue: { + 50: '#DCEEFB', + 75: '#c9e7fc', + 100: '#B6E0FE', + 150: '#9DD2F9', + 200: '#84C5F4', + 300: '#62B0E8', + 400: '#4098D7', + 500: '#2680C2', + 600: '#186FAF', + 700: '#0F609B', + 800: '#0A558C', + 900: '#003E6B', + }, + + teal: { + 50: '#f0fdfa', + 75: '#defcf5', + 100: '#ccfbf1', + 200: '#99f6e4', + 300: '#5eead4', + 400: '#2dd4bf', + 500: '#14b8a6', + 600: '#0d9488', + 700: '#0f766e', + 800: '#115e59', + 900: '#134e4a', + 950: '#092725', + }, +}; + +module.exports = { + content: ['./src/**/*.{js,jsx,ts,tsx}', './docs/**/*.{md,mdx}'], + theme: { + extend: { + colors: customColors, + fill: customColors, + }, + }, + plugins: [], + prefix: 'tw-', +}; diff --git a/packages/docs/tsconfig.json b/packages/docs/tsconfig.json new file mode 100644 index 00000000..6f475698 --- /dev/null +++ b/packages/docs/tsconfig.json @@ -0,0 +1,7 @@ +{ + // This file is not used in compilation. It is here just for a nice editor experience. + "extends": "@tsconfig/docusaurus/tsconfig.json", + "compilerOptions": { + "baseUrl": "." + } +} diff --git a/packages/docs/yarn.lock b/packages/docs/yarn.lock new file mode 100644 index 00000000..532f7881 --- /dev/null +++ b/packages/docs/yarn.lock @@ -0,0 +1,8210 @@ +# THIS IS AN AUTOGENERATED FILE. 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sha512-rVksvsnNCdJ/ohGc6xgPwyN8eheCxsiLM8mxuE/t/mOVqJewPuO1miLpTHQiRgTKCLexL4MeAFVagts7HmNZ2Q== + +zwitch@^1.0.0: + version "1.0.5" + resolved "https://registry.yarnpkg.com/zwitch/-/zwitch-1.0.5.tgz#d11d7381ffed16b742f6af7b3f223d5cd9fe9920" + integrity sha512-V50KMwwzqJV0NpZIZFwfOD5/lyny3WlSzRiXgA0G7VUnRlqttta1L6UQIHzd6EuBY/cHGfwTIck7w1yH6Q5zUw== diff --git a/packages/ui/.gitignore b/packages/ui/.gitignore index a547bf36..7d97ae56 100644 --- a/packages/ui/.gitignore +++ b/packages/ui/.gitignore @@ -7,11 +7,6 @@ yarn-error.log* pnpm-debug.log* lerna-debug.log* -node_modules -dist -dist-ssr -*.local - # Editor directories and files .vscode/* !.vscode/extensions.json @@ -22,3 +17,9 @@ dist-ssr *.njsproj *.sln *.sw? + +# other +node_modules +dist +dist-ssr +*.local \ No newline at end of file diff --git a/packages/ui/package.json b/packages/ui/package.json index dfa30e65..44b8f6da 100644 --- a/packages/ui/package.json +++ b/packages/ui/package.json @@ -1,7 +1,7 @@ { "name": "pyra-ui", "private": true, - "version": "4.0.5", + "version": "4.0.6", "scripts": { "dev": "vite", "build": "tsc && vite build", @@ -36,7 +36,7 @@ "tailwindcss": "3.1.2", "tilg": "0.1.1", "typescript": "4.7.3", - "vite": "2.9.7" + "vite": "2.9.13" }, "prettier": { "trailingComma": "es5", diff --git a/packages/ui/src-tauri/tauri.conf.json b/packages/ui/src-tauri/tauri.conf.json index f721528e..ce3640ad 100644 --- a/packages/ui/src-tauri/tauri.conf.json +++ b/packages/ui/src-tauri/tauri.conf.json @@ -8,7 +8,7 @@ }, "package": { "productName": "Pyra UI", - "version": "4.0.5" + "version": "4.0.6" }, "tauri": { "allowlist": { @@ -41,10 +41,10 @@ "fs": { "readFile": true, "scope": [ - "$DOWNLOAD/*/pyra-4.0.5/*", - "$DOWNLOAD\\pyra-4.0.5\\*", - "$DOCUMENT/*/pyra-4.0.5/*", - "$DOCUMENT\\pyra-4.0.5\\*" + "$DOWNLOAD/*/pyra-4.0.6/*", + "$DOWNLOAD\\pyra-4.0.6\\*", + "$DOCUMENT/*/pyra-4.0.6/*", + "$DOCUMENT\\pyra-4.0.6\\*" ] } }, diff --git a/packages/ui/src/components/configuration/rows/config-element-text.tsx b/packages/ui/src/components/configuration/rows/config-element-text.tsx index 233b4301..d01cb883 100644 --- a/packages/ui/src/components/configuration/rows/config-element-text.tsx +++ b/packages/ui/src/components/configuration/rows/config-element-text.tsx @@ -10,6 +10,7 @@ export default function ConfigElementText(props: { disabled?: boolean; numeric?: boolean; postfix?: string; + showFileSelector?: boolean; }) { const { title, value, oldValue, setValue, disabled, numeric, postfix } = props; @@ -24,7 +25,7 @@ export default function ConfigElementText(props: { return `${v}`.replace(/[^\d\.]/g, ''); } - const showfileSelector = title.endsWith('Path'); + const showfileSelector = title.endsWith('Path') || props.showFileSelector; const hasBeenModified = !functionalUtils.deepEqual(oldValue, value); return ( diff --git a/packages/ui/src/components/configuration/sections/config-section-upload.tsx b/packages/ui/src/components/configuration/sections/config-section-upload.tsx index 5a6ce851..2c0d4f9f 100644 --- a/packages/ui/src/components/configuration/sections/config-section-upload.tsx +++ b/packages/ui/src/components/configuration/sections/config-section-upload.tsx @@ -101,6 +101,7 @@ export default function ConfigSectionUpload() { oldValue={ centralSectionConfig !== null ? centralSectionConfig.src_directory_ifgs : 'null' } + showFileSelector /> ", "Moritz Makowski "] @@ -20,11 +20,11 @@ fabric = "^2.7.1" pydantic = "^1.9.2" tqdm = "^4.64.0" colorama = "^0.4.5" +deepdiff = "^5.8.1" [tool.poetry.dev-dependencies] pytest = "7.1.2" black = "22.3.0" -deepdiff = "^5.8.1" mypy = "^0.971" types-paramiko = "^2.11.3" types-invoke = "^1.7.3" @@ -51,6 +51,7 @@ module = [ "jdcal", "snap7", "snap7.*", + "deepdiff" ] ignore_missing_imports = true diff --git a/run_headless_helios_thread.py b/run-headless-helios-thread.py similarity index 100% rename from run_headless_helios_thread.py rename to run-headless-helios-thread.py diff --git a/run_headless_upload_thread.py b/run-headless-upload-thread.py similarity index 100% rename from run_headless_upload_thread.py rename to run-headless-upload-thread.py diff --git a/scripts/find_and_kill_opus.py b/scripts/find_and_kill_opus.py deleted file mode 100644 index c8a4505c..00000000 --- a/scripts/find_and_kill_opus.py +++ /dev/null @@ -1,10 +0,0 @@ -import os -import psutil - -processes = [p.name() for p in psutil.process_iter()] -print(sorted(processes)) - -for e in ["opus.exe", "OpusCore.exe"]: - if e in processes: - exit_code = os.system(f"taskkill /f /im {e}") - assert exit_code == 0, f"taskkill of '{e}' ended with an exit_code of {exit_code}" diff --git a/scripts/migrate_vbdsd_images.py b/scripts/migrate_vbdsd_images.py deleted file mode 100644 index 58632f2c..00000000 --- a/scripts/migrate_vbdsd_images.py +++ /dev/null @@ -1,18 +0,0 @@ -import os -import re -from tqdm import tqdm - -PROJECT_DIR = os.path.dirname(os.path.dirname(os.path.abspath(__file__))) - -img_pattern = re.compile("^\d{8}\-\d{6}\-(0|1|\-1)\-(raw|processed)\.jpg$") -for img_name in tqdm(os.listdir(os.path.join(PROJECT_DIR, "logs", "vbdsd"))): - if not img_pattern.match(img_name): - continue - date = img_name[:8] - dst_dir = os.path.join(PROJECT_DIR, "logs", "helios", date) - if not os.path.exists(dst_dir): - os.mkdir(dst_dir) - - os.rename( - os.path.join(PROJECT_DIR, "logs", "vbdsd", img_name), os.path.join(dst_dir, img_name) - ) diff --git a/scripts/remove_helios_images.py b/scripts/remove_helios_images.py deleted file mode 100644 index 038f47ba..00000000 --- a/scripts/remove_helios_images.py +++ /dev/null @@ -1,14 +0,0 @@ -import os - -PROJECT_DIR = os.path.dirname(os.path.dirname(os.path.abspath(__file__))) -IMG_PATH = os.path.join(PROJECT_DIR, "logs", "helios") - -image_names = list(sorted([f for f in os.listdir(IMG_PATH) if f.endswith(".jpg")])) - -delete_count = 0 - -for n in image_names: - os.remove(os.path.join(IMG_PATH, n)) - delete_count += 1 - -print(f"deleted {delete_count} images") diff --git a/scripts/sparsify_helios_images.py b/scripts/sparsify_helios_images.py deleted file mode 100644 index 3826741f..00000000 --- a/scripts/sparsify_helios_images.py +++ /dev/null @@ -1,22 +0,0 @@ -import os - -PROJECT_DIR = os.path.dirname(os.path.dirname(os.path.abspath(__file__))) -IMG_PATH = os.path.join(PROJECT_DIR, "logs", "helio") - -image_names = list(sorted([f for f in os.listdir(IMG_PATH) if f.endswith(".jpg")])) -kept_times = {} - -for n in image_names: - if n[:13] in kept_times: - continue - kept_times[n[:13]] = n.replace("-raw.jpg", "").replace("-processed.jpg", "") - -delete_count = 0 - -for n in image_names: - if (n[:13] not in kept_times) or (not n.startswith(kept_times[n[:13]])): - os.remove(os.path.join(IMG_PATH, n)) - delete_count += 1 - -print(f"deleted {delete_count} images") -print(f"kept {len(image_names) - delete_count} images") diff --git a/scripts/take_exposure_image_series.py b/scripts/take_exposure_image_series.py deleted file mode 100644 index 0e882df4..00000000 --- a/scripts/take_exposure_image_series.py +++ /dev/null @@ -1,108 +0,0 @@ -import time -import cv2 as cv -import numpy as np - - -class Helios: - cam = None - - @staticmethod - def init_cam(retries: int = 5): - camera_id = 0 - - Helios.cam = cv.VideoCapture(camera_id, cv.CAP_DSHOW) - Helios.cam.release() - - for _ in range(retries): - Helios.cam = cv.VideoCapture(camera_id, cv.CAP_DSHOW) - if Helios.cam.isOpened(): - Helios.cam.set(cv.CAP_PROP_FRAME_WIDTH, 1280) # width - Helios.cam.set(cv.CAP_PROP_FRAME_HEIGHT, 720) # height - Helios.update_camera_settings( - exposure=-12, brightness=64, contrast=64, saturation=0, gain=0 - ) - print(f"using backend {Helios.cam.getBackendName()}") - return - else: - time.sleep(2) - - raise Exception("could not initialize camera") - - @staticmethod - def update_camera_settings( - exposure: int = None, - brightness: int = None, - contrast: int = None, - saturation: int = None, - gain: int = None, - ): - if exposure is not None: - Helios.cam.set(cv.CAP_PROP_EXPOSURE, exposure) - assert ( - Helios.cam.get(cv.CAP_PROP_EXPOSURE) == exposure - ), f"could not set exposure to {exposure}" - if brightness is not None: - Helios.cam.set(cv.CAP_PROP_BRIGHTNESS, brightness) - assert ( - Helios.cam.get(cv.CAP_PROP_BRIGHTNESS) == brightness - ), f"could not set brightness to {brightness}" - if contrast is not None: - Helios.cam.set(cv.CAP_PROP_CONTRAST, contrast) - assert ( - Helios.cam.get(cv.CAP_PROP_CONTRAST) == contrast - ), f"could not set contrast to {contrast}" - if saturation is not None: - Helios.cam.set(cv.CAP_PROP_SATURATION, saturation) - assert ( - Helios.cam.get(cv.CAP_PROP_SATURATION) == saturation - ), f"could not set saturation to {saturation}" - if gain is not None: - Helios.cam.set(cv.CAP_PROP_GAIN, gain) - assert Helios.cam.get(cv.CAP_PROP_GAIN) == gain, f"could not set gain to {gain}" - - # throw away some images after changing settings - for i in range(2): - Helios.cam.read() - - @staticmethod - def take_image(retries: int = 5): - assert Helios.cam is not None, "camera is not initialized yet" - assert Helios.cam.isOpened(), "camera is not open" - for _ in range(retries + 1): - ret, frame = Helios.cam.read() - if ret: - return frame - raise Exception("could not take image") - - @staticmethod - def get_best_exposure() -> int: - """ - determine the exposure, where the overall - mean pixel value color is closest to 100 - """ - exposure_results = [] - for e in range(-12, 0): - Helios.update_camera_settings(exposure=e) - image = Helios.take_image() - exposure_results.append({"exposure": e, "mean": np.mean(image)}) - print(exposure_results) - return min(exposure_results, key=lambda r: abs(r["mean"] - 100))["exposure"] - - -if __name__ == "__main__": - print(f"Initializing Helios camera") - - Helios.init_cam() - print(f"successfully initialized camera") - - best_exposure = Helios.get_best_exposure() - print(f"best_exposure = {best_exposure}") - - Helios.update_camera_settings(exposure=best_exposure) - - sample_image = Helios.take_image() - print(np.mean(sample_image)) - cv.imwrite(f"sample-image-exposure-{best_exposure}.jpg", sample_image) - - Helios.cam.release() - cv.destroyAllWindows() diff --git a/tests/cli/test_cli_config.py b/tests/cli/test_cli_config.py index e40aafea..899dc8f7 100644 --- a/tests/cli/test_cli_config.py +++ b/tests/cli/test_cli_config.py @@ -20,7 +20,7 @@ def assert_config_file_content(expected_content: dict, message: str) -> None: print(f"expected_content: {json.dumps(expected_content, indent=4)}") difference = DeepDiff(expected_content, actual_content) - assert difference == {}, f"{message}: {difference}" + assert len(difference) == 0, f"{message}: {difference}" def run_cli_command(command: list[str]) -> str: diff --git a/tests/fixtures.py b/tests/fixtures.py index 2d8d191d..45251490 100644 --- a/tests/fixtures.py +++ b/tests/fixtures.py @@ -10,7 +10,7 @@ SAMPLE_CONFIG = { "general": { - "version": "4.0.5", + "version": "4.0.6", "seconds_per_core_interval": 30, "test_mode": True, "station_id": "...",