-
Notifications
You must be signed in to change notification settings - Fork 4
/
environment.yaml
127 lines (127 loc) · 3.46 KB
/
environment.yaml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
name: protssn
channels:
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/
- pytorch
- nvidia
- pyg
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- bzip2=1.0.8=h5eee18b_6
- ca-certificates=2024.3.11=h06a4308_0
- expat=2.6.2=h6a678d5_0
- ld_impl_linux-64=2.38=h1181459_1
- libffi=3.4.4=h6a678d5_1
- libgcc-ng=11.2.0=h1234567_1
- libgomp=11.2.0=h1234567_1
- libstdcxx-ng=11.2.0=h1234567_1
- libuuid=1.41.5=h5eee18b_0
- ncurses=6.4=h6a678d5_0
- openssl=3.0.13=h7f8727e_2
- pip=24.0=py312h06a4308_0
- python=3.12.3=h996f2a0_1
- readline=8.2=h5eee18b_0
- setuptools=69.5.1=py312h06a4308_0
- sqlite=3.45.3=h5eee18b_0
- tk=8.6.14=h39e8969_0
- wheel=0.43.0=py312h06a4308_0
- xz=5.4.6=h5eee18b_1
- zlib=1.2.13=h5eee18b_1
- pip:
- accelerate==0.30.1
- aiohttp==3.9.5
- aiosignal==1.3.1
- attrs==23.2.0
- bio==1.7.1
- biopython==1.83
- biothings-client==0.3.1
- biotite==0.40.0
- certifi==2024.2.2
- charset-normalizer==3.3.2
- click==8.1.7
- contourpy==1.2.1
- cycler==0.12.1
- datasets==2.19.1
- dill==0.3.8
- docker-pycreds==0.4.0
- einops==0.8.0
- filelock==3.14.0
- fonttools==4.52.1
- frozenlist==1.4.1
- fsspec==2024.3.1
- gitdb==4.0.11
- gitpython==3.1.43
- gprofiler-official==1.0.0
- huggingface-hub==0.23.1
- idna==3.7
- jinja2==3.1.4
- joblib==1.4.2
- kiwisolver==1.4.5
- lightning==2.2.5
- lightning-utilities==0.11.2
- markupsafe==2.1.5
- matplotlib==3.9.0
- mpmath==1.3.0
- msgpack==1.0.8
- multidict==6.0.5
- multiprocess==0.70.16
- mygene==3.2.2
- networkx==3.3
- numpy==1.26.4
- nvidia-cublas-cu12==12.1.3.1
- nvidia-cuda-cupti-cu12==12.1.105
- nvidia-cuda-nvrtc-cu12==12.1.105
- nvidia-cuda-runtime-cu12==12.1.105
- nvidia-cudnn-cu12==8.9.2.26
- nvidia-cufft-cu12==11.0.2.54
- nvidia-curand-cu12==10.3.2.106
- nvidia-cusolver-cu12==11.4.5.107
- nvidia-cusparse-cu12==12.1.0.106
- nvidia-nccl-cu12==2.20.5
- nvidia-nvjitlink-cu12==12.5.40
- nvidia-nvtx-cu12==12.1.105
- packaging==24.0
- pandas==2.2.2
- pillow==10.3.0
- platformdirs==4.2.2
- pooch==1.8.1
- protobuf==4.25.3
- psutil==5.9.8
- pyarrow==16.1.0
- pyarrow-hotfix==0.6
- pyparsing==3.1.2
- python-dateutil==2.9.0.post0
- pytorch-lightning==2.2.5
- pytz==2024.1
- pyyaml==6.0.1
- rdkit==2023.9.6
- regex==2024.5.15
- requests==2.32.2
- safetensors==0.4.3
- scikit-learn==1.5.0
- scipy==1.13.1
- seaborn==0.13.2
- sentry-sdk==2.3.1
- setproctitle==1.3.3
- six==1.16.0
- smmap==5.0.1
- sympy==1.12
- threadpoolctl==3.5.0
- tokenizers==0.19.1
- torch==2.3.0
- torch-geometric==2.5.3
- torchaudio==2.3.0
- torchmetrics==1.4.0.post0
- torchvision==0.18.0
- tqdm==4.66.4
- transformers==4.41.1
- typing-extensions==4.12.0
- tzdata==2024.1
- urllib3==2.2.1
- wandb==0.17.0
- xxhash==3.4.1
- yarl==1.9.4
prefix: /public/home/tanyang/miniconda3/envs/protssn