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Update Picard version to 3.3.0 #40

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merged 2 commits into from
Oct 14, 2024
Merged

Update Picard version to 3.3.0 #40

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21e9be5
update picard version to 3.3.0
j2salmingo Oct 9, 2024
18f8fc6
update README
j2salmingo Oct 12, 2024
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4 changes: 4 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -7,6 +7,10 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/).

This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## [3.3.0] - 2024-10-09
### Added
- Update Picard 3.3.0

## [3.2.0] - 2024-06-28
### Added
- Update Picard 3.2.0
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2 changes: 1 addition & 1 deletion Dockerfile
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Expand Up @@ -2,7 +2,7 @@ ARG MINIFORGE_VER=23.3.1-1
FROM condaforge/mambaforge:${MINIFORGE_VER} AS builder

# Use mamba to install tools and dependencies into /usr/local
ARG PICARD_VERSION=3.2.0
ARG PICARD_VERSION=3.3.0
RUN mamba create -qy -p /usr/local \
-c bioconda \
-c conda-forge \
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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -4,12 +4,12 @@ UCLA CDS Dockerfile for Picard (picard-slim) from the Broad Institute. A set of
# Documentation

Picard can be found on GitHub at [broadinstitute/picard](https://github.com/broadinstitute/picard).
`picard.jar` can be found at `/usr/local/share/picard-slim-3.1.1-0/picard.jar`
`picard.jar` can be found at `/usr/local/share/picard-slim-3.3.0-0/picard.jar`

# Version
| Tool | Version |
|------|---------|
| picard-slim | 3.2.0 |
| picard-slim | 3.3.0 |
| Java | 1.17 |

## References
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2 changes: 1 addition & 1 deletion metadata.yaml
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Expand Up @@ -5,7 +5,7 @@ Maintainers: ['selinawu@mednet.ucla.edu']
Contributors: ['Aaron Holmes', 'Helena Winata', 'Jieun Oh', 'Takafumi Yamaguchi', 'Arpi Beshlikyan', 'Selina Wu', 'Beth Neilsen', 'Joseph Salmingo']
Languages: ['Dockerfile']
Tools: ['Picard']
Version: ['3.2.0']
Version: ['3.3.0']
Purpose: 'A set of tools for manipulating SAM/BAM/CRAM and VCF file formats'
References: 'https://github.com/broadinstitute/picard'
image_name: 'picard'
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