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Manta not running on F2 node #58

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Faizal-Eeman opened this issue Jul 29, 2022 · 0 comments
Open

Manta not running on F2 node #58

Faizal-Eeman opened this issue Jul 29, 2022 · 0 comments
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@Faizal-Eeman
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Describe the issue
Manta fails to run on F2 node. The process call_gSV_Manta stops halfway after execution with the memory error below.
[WorkflowRunner] [ERROR] Exception: Task memory requirement exceeds full available resources

  • v4.0.0-rc.1
  • Cluster - SLURM
  • Node type - F2
  • Submission method - submission script
  • Actual submission script: python /hot/user/mmootor/tool-submit-nf/submit_nextflow_pipeline.py --nextflow_script /hot/user/mmootor/git/pipeline-call-gSV/pipeline/call-gSV.nf --nextflow_config /hot/software/pipeline/pipeline-call-gSV/Nextflow/development/unreleased/mmootor-fix-F2-detection/config/fix-F2-detection-A-mini-hg38.config --pipeline_run_name gSV-fix-F2-A-mini --partition_type F2 --email mmootor@mednet.ucla.edu
  • Log file - /hot/software/pipeline/pipeline-call-gSV/Nextflow/development/4.0.0-rc.1/mmootor-fix-F2-detection/gSV-fix-F2-A-mini.log
  • Config file - /hot/software/pipeline/pipeline-call-gSV/Nextflow/development/4.0.0-rc.1/mmootor-fix-F2-detection/config/fix-F2-detection-A-mini-hg38.config
  • Path to the working directory - /hot/software/pipeline/pipeline-call-gSV/Nextflow/development/4.0.0-rc.1/mmootor-fix-F2-detection/A-mini/
@Faizal-Eeman Faizal-Eeman self-assigned this Jul 29, 2022
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