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Sfitz add mosdepth quantize #88

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Sfitz add mosdepth quantize #88

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Commits on Jun 27, 2024

  1. add mosdepth and index file and change path name

    @sorelfitzgibbon
    sorelfitzgibbon committed Jun 27, 2024
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  2. update resources

    @sorelfitzgibbon
    sorelfitzgibbon committed Jun 27, 2024
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  3. update version in metadata

    @sorelfitzgibbon
    sorelfitzgibbon committed Jun 27, 2024
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  4. fix path to bam in tuple

    @sorelfitzgibbon
    sorelfitzgibbon committed Jun 27, 2024
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  5. update changelog

    @sorelfitzgibbon
    sorelfitzgibbon committed Jun 27, 2024
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Commits on Jul 22, 2024

  1. resource adjustments

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 22, 2024
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  2. adjust log info

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 22, 2024
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  3. change process names

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 22, 2024
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  4. rename bamqc_outformat to bamqc_output_format

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 22, 2024
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  5. rename bamqc_outformat to bamqc_output_format

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 22, 2024
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  6. remove fastqc as default

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 22, 2024
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  7. fix CollectWgsMetrics params bug

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 22, 2024
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  8. add mosdepth and index file and change path name

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 22, 2024
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  9. update changelog

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 22, 2024
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Commits on Jul 23, 2024

  1. Merge branch 'main' of github.com:uclahs-cds/pipeline-generate-SQC-BA… 

    …M into merge-test
    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 23, 2024
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  2. fix left over merge lines M64.config

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 23, 2024
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Commits on Jul 25, 2024

  1. change template mosdepth fast to false

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 25, 2024
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Commits on Jul 26, 2024

  1. add quantize to resource configs

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 26, 2024
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  2. add quantize to resource configs

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 26, 2024
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  3. update schema

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 26, 2024
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  4. add quantize

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 26, 2024
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  5. add quantize

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 26, 2024
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  6. Merge branch 'sfitz-add-mosdepth' into sfitz-add-mosdepth-quantize

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 26, 2024
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  7. add mosdepth to nftest

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 26, 2024
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  8. update nftest mosdepth slow

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 26, 2024
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Commits on Jul 27, 2024

  1. change algorithm option coverage to windows

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 27, 2024
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  2. update README

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 27, 2024
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Commits on Jul 29, 2024

  1. merge in coverage to windows

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 29, 2024
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  2. require quantize cutoffs

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 29, 2024
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  3. output filename dash and add to test config

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 29, 2024
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  4. update changelog

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 29, 2024
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Commits on Jul 31, 2024

  1. add mosdepth per-base output

    @sorelfitzgibbon
    sorelfitzgibbon committed Jul 31, 2024
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Commits on Oct 29, 2024

  1. update submodules

    @sorelfitzgibbon
    sorelfitzgibbon committed Oct 29, 2024
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  2. merge main

    @sorelfitzgibbon
    sorelfitzgibbon committed Oct 29, 2024
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  3. move gitignore lines to local only

    @sorelfitzgibbon
    sorelfitzgibbon committed Oct 29, 2024
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  4. add nftest config files

    @sorelfitzgibbon
    sorelfitzgibbon committed Oct 29, 2024
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  5. finish main merge

    @sorelfitzgibbon
    sorelfitzgibbon committed Oct 29, 2024
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  6. alorithm name

    @sorelfitzgibbon
    sorelfitzgibbon committed Oct 29, 2024
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  7. add quantize to nftest and update config names

    @sorelfitzgibbon
    sorelfitzgibbon committed Oct 29, 2024
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  8. typo

    @sorelfitzgibbon
    sorelfitzgibbon committed Oct 29, 2024
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Commits on Oct 30, 2024

  1. update readme

    @sorelfitzgibbon
    sorelfitzgibbon committed Oct 30, 2024
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  2. fix duplicate keys

    @sorelfitzgibbon
    sorelfitzgibbon committed Oct 30, 2024
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  3. fix nftest

    @sorelfitzgibbon
    sorelfitzgibbon committed Oct 30, 2024
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  4. reorganize nftest.yml

    @sorelfitzgibbon
    sorelfitzgibbon committed Oct 30, 2024
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Commits on Nov 1, 2024

  1. fix minor issues

    @sorelfitzgibbon
    sorelfitzgibbon committed Nov 1, 2024
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  2. fix output filenames, mosdepth windows too

    @sorelfitzgibbon
    sorelfitzgibbon committed Nov 1, 2024
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  3. Merge remote-tracking branch 'origin' into sfitz-add-mosdepth-quantize

    @sorelfitzgibbon
    sorelfitzgibbon committed Nov 1, 2024
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