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nftest.yml
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nftest.yml
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---
global:
temp_dir: test/work
remove_temp: true
clean_logs: true
nf_config: test/nftest.config
cases:
- name: A-mini-n2
nf_script: ./main.nf
params_file: ./test/single.yaml
skip: false
verbose: true
asserts:
- actual: recalibrate-BAM-*/TWGSAMIN000001/GATK-*/output/BWA-MEM2-*_GATK-*_A-mini_S2-v1.1.5.bam
expect: /hot/software/pipeline/pipeline-recalibrate-BAM/Nextflow/development/output/BWA-MEM2-2.2.1_GATK-4.2.4.1_A-mini_S2-v1.1.5.bam
method: md5
- actual: recalibrate-BAM-*/TWGSAMIN000001/GATK-*/output/BWA-MEM2-*_GATK-*_A-mini_S2-v1.1.5.bam.bai
expect: /hot/software/pipeline/pipeline-recalibrate-BAM/Nextflow/development/output/BWA-MEM2-2.2.1_GATK-4.2.4.1_A-mini_S2-v1.1.5.bam.bai
method: md5
- actual: recalibrate-BAM-*/TWGSAMIN000001/GATK-*/output/BWA-MEM2-*_GATK-*_A-mini_S2-v1.1.5.bam.sha512
expect: /hot/software/pipeline/pipeline-recalibrate-BAM/Nextflow/development/output/BWA-MEM2-2.2.1_GATK-4.2.4.1_A-mini_S2-v1.1.5.bam.sha512
method: md5
- actual: recalibrate-BAM-*/TWGSAMIN000001/GATK-*/output/BWA-MEM2-*_GATK-*_A-mini_S2-v1.1.5.bam.bai.sha512
expect: /hot/software/pipeline/pipeline-recalibrate-BAM/Nextflow/development/output/BWA-MEM2-2.2.1_GATK-4.2.4.1_A-mini_S2-v1.1.5.bam.bai.sha512
method: md5