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make-ontology.py
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make-ontology.py
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#! /usr/bin/env python
# coding: utf-8
import sys
import getopt
import re
import csv
BASEURL = 'urn:UNSET'
TITLE = 'no title provided on the command line'
DESCRIPTION="""
no summary file provided on command line
"""
try:
opts, args = getopt.getopt(sys.argv[1:],
"b:o:h:d:s:t",
["base=", "ontology=", "html=", "date=", "summary=", "title="])
except getopt.GetoptError:
print "Bad options"
sys.exit(1)
if len(args) != 1:
print "Usage: make-ontology.py --base=<URI> --ontology=<ttl file> --html=<html file> --date=<current date> --summary=<summary.html> --title=<vocab name> <input.csv>"
sys.exit(1)
csv_input_file = args[0]
#### Header and metadata
ontology_output_file = None
html_output_file = None
date_str = None
title = None
summ = None
for o, a in opts:
if o in ("-o" "--ontology"):
ontology_output_file = a
elif o in ("-h" "--html"):
html_output_file = a
elif o in ("-d" "--date"):
date_str = a
elif o in ("-b" "--base"):
BASEURL = a
elif o in ("-s" "--summary"):
summ = a
elif o in ("-t" "--title"):
TITLE = a + ' vocabulary'
else:
print "Unrecognised option", o
sys.exit(1)
if not (ontology_output_file or html_output_file):
print "Need to specify either --html or --ontology or both"
sys.exit(1)
if ontology_output_file:
ont = open(ontology_output_file, 'w')
if html_output_file:
html = open(html_output_file, 'w')
if summ:
sf = open(summ, 'r')
DESCRIPTION = sf.read()
if ont:
ont.write("""@base <{}>.
@prefix : <#>.
@prefix dc: <http://purl.org/dc/terms/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/>.
<> a owl:Ontology;
dc:created "{}";
dc:creator [ foaf:name "Patrick Dowler" ];
rdfs:label "{}"@en;
dc:title "{}"@en;
dc:description \"\"\"{}\"\"\".
dc:created a owl:AnnotationProperty.
dc:creator a owl:AnnotationProperty.
dc:title a owl:AnnotationProperty.
dc:description a owl:AnnotationProperty.
""".format(BASEURL, date_str, TITLE, TITLE, DESCRIPTION))
if html:
# Yes, we're going to write out XML with print statements.
# Yes, don't worry, I feel dirty.
## Yes, you should :-) PD ##
html.write("""<html xmlns='http://www.w3.org/1999/xhtml'>
<head>
<title>{}</title>
</head>
<body>
<h1>{}</h1>
<p>This is the description of the namespace <code>{}</code> as of {}.</p>
<p>{}</p>
<p>
Alternate formats: <a href="DataProductType.rdf">RDF</a> <a href="DataProductType.ttl">TTL</a>
</p>
<table>
<tr><th>Predicate</th><th>Parent</th><th>Label</th><th>Comment</th></tr>
""".format(TITLE, TITLE, BASEURL, date_str, DESCRIPTION, date_str, date_str))
#### Parse the CSV file
ignored_row = re.compile('^ *(#.*)?$')
with open(csv_input_file, 'r') as csvfile:
current_parent = None
csv = csv.reader(csvfile)
for row in csv:
if len(row) == 0:
continue
(term, level_string, label, description) = row
if ignored_row.match(term):
continue
level = int(level_string)
# I need to make the following more generic if we end up with
# more levels in the set of predicates
if level == 1:
current_parent = term
if ont:
ont.write('<#{}> a rdf:Property'.format(term))
if html:
html.write('<tr><td>#{}</td><td></td>'.format(term))
else:
if ont:
ont.write('<#{}> a rdf:Property;\n rdfs:subPropertyOf <#{}>'.format(term, current_parent))
if html:
html.write('<tr><td>#{}</td><td>#{}</td>'.format(term, current_parent))
if label != '':
if ont:
ont.write(';\n rdfs:label "{}"'.format(label))
if html:
html.write('<td>{}</td>'.format(label))
if description != '':
if ont:
ont.write(';\n rdfs:comment "{}"'.format(description))
if html:
html.write('<td>{}</td>'.format(description))
if ont:
ont.write('.\n\n')
if html:
html.write('</tr>\n')
if html:
html.write('</table></body></html>')