run tests on all branches (#44) #173
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| name: test | |
| on: | |
| push: | |
| branches: | |
| - '*' | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.11] | |
| max-parallel: 1 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up conda environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: my-environment | |
| environment-file: environment.yaml | |
| python-version: ${{ matrix.python-version }} | |
| auto-activate-base: true | |
| - name: Install [openmm pdbfixer] with conda | |
| shell: bash -l {0} | |
| run: | | |
| conda install -c conda-forge openmm pdbfixer | |
| - name: Install dependencies | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install --upgrade pip | |
| if [ -f dev-requirements.txt ]; then pip install -r dev-requirements.txt; fi | |
| - name: Install | |
| shell: bash -l {0} | |
| run: | | |
| pip install . | |
| - name: Check pre-commit | |
| run: | | |
| pip install pre-commit | |
| pre-commit run --all-files || ( git status --short ; git diff ; exit 1 ) | |
| - name: Run Test | |
| shell: bash -l {0} | |
| env: | |
| OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }} | |
| SEMANTIC_SCHOLAR_API_KEY: ${{ secrets.SEMANTIC_SCHOLAR_API_KEY }} | |
| PQA_API_KEY : ${{ secrets.PQA_API_TOKEN }} | |
| run: | | |
| pytest -m "not skip" tests |