TxDb.Paeruginosa.PA14

Annotation package for Pseudomonas aeruginosa str. PA14. Data source: NCBI

Installation

You can install the development version of TxDb.Paeruginosa.PA14 like so:

devtools::install_github('utubun/TxDb.Paeruginosa.PA14')

Example

This is a basic example which shows you how to solve a common problem:

library(TxDb.Paeruginosa.PA14)

pa14tx <- TxDb.Paeruginosa.PA14

# show the information related to the build
pa14tx

# extract genes, as genomic ranges
gr <- GenomicFeatures::genes(pa14tx)

# show extracted ranges
gr

# convert gene ID into transcript names
head(
  (nm <- biomaRt::select(pa14tx, names(gr), 'TXNAME', 'GENEID')
)

More examples

methods(class = class(pa14tx))

help(package = 'GenomicFeatures')