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This seems redundant since rbf_feat is then added to the variable pair, which already contains the positional encoding from the MSA_emb module.
I know that the model is already trained with this in place, so it probably doesn't matter, but I just wanted to check if my interpretation is correct? I also noticed that the corresponding section for this in RFDiffusion has been modified so there is no additional positional encoding added.
Thanks
The text was updated successfully, but these errors were encountered:
Hi,
I see that an additional positional encoding is added in the forward part of the IterBlock module.
https://github.com/uw-ipd/RoseTTAFold2/blob/main/network/Track_module.py#L544C1-L550C47
This seems redundant since
rbf_feat
is then added to the variablepair
, which already contains the positional encoding from theMSA_emb
module.I know that the model is already trained with this in place, so it probably doesn't matter, but I just wanted to check if my interpretation is correct? I also noticed that the corresponding section for this in RFDiffusion has been modified so there is no additional positional encoding added.
Thanks
The text was updated successfully, but these errors were encountered: