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fix: avoid cp39-musllinux_aarch64 timeout #4634

fix: avoid cp39-musllinux_aarch64 timeout

fix: avoid cp39-musllinux_aarch64 timeout #4634

Workflow file for this run

name: Python package
on:
push:
branches:
- master
pull_request:
schedule:
- cron: "0 2 * * 1-5"
concurrency:
group: ${{ github.workflow }}-${{ github.ref || github.run_id }}
cancel-in-progress: ${{ github.event_name == 'pull_request' }}
defaults:
run:
shell: bash
jobs:
main:
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest, windows-latest, macos-latest]
python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
exclude:
- {os: windows-latest, python-version: "3.8"}
- {os: macos-latest, python-version: "3.8"}
steps:
- uses: actions/checkout@v2
with:
submodules: true
- uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- run: python -m pip install --upgrade pip setuptools wheel uv
# - uses: actions/checkout@v2
# if: ${{ (github.event.pull_request.head.repo.full_name == 'vaexio/vaex') && (matrix.os == 'ubuntu-latest') }}
# with:
# repository: vaexio/vaex-enterprise
# token: ${{ secrets.PAT_PULL_ENTERPRISE }}
# path: vaex-enterprise
- name: Setup Graphviz
uses: ts-graphviz/setup-graphviz@v2
- name: Setup PCRE (Nix-only)
if: matrix.os != 'windows-latest'
run: sudo -E bash bin/install_pcre.sh
- name: Install OpenMP runtime (Mac-only)
if: startswith(matrix.os, 'macos')
run: brew install libomp
# xcode 15.2 throws compilation errors ref https://github.com/vaexio/vaex/pull/2432
# select older xcode from the available versions on the runner ref https://github.com/actions/runner-images/blob/ff9acc6/images/macos/macos-13-Readme.md#xcode
- name: Switch to older Xcode (Mac-only)
if: startswith(matrix.os, 'macos')
run: sudo xcode-select -s "/Applications/Xcode_15.0.1.app"
- name: Copy dll (Windows-only)
if: (matrix.os == 'windows-latest')
uses: ./ci/actions/windll
- name: Install vaex
run: uv pip install -v --system .[ci]
- run: uv pip freeze
# - name: Install vaex-enterprise
# if: ${{ (github.event.pull_request.head.repo.full_name == 'vaexio/vaex') && (matrix.os == 'ubuntu-latest') }}
# run: |
# cd vaex-enterprise
# micromamba install -c conda-forge distributed
# pip install ray
# pip install -e .
# - name: Lint with flake8
# run: |
# echo "soon"
# # pip install flake8
# # stop the build if there are Python syntax errors or undefined names
# # flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
# # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with pytest
run: |
./ci/04-run-test-suite.sh
- name: Test with pytest (with cache on)
if: matrix.python-version == '3.12' && matrix.os == 'ubuntu-latest'
run: |
VAEX_CACHE_RESULTS=1 ./ci/04-run-test-suite.sh
- name: Check ml spec
run: |
python -m vaex.ml.spec packages/vaex-ml/vaex/ml/spec_new.json
diff packages/vaex-ml/vaex/ml/spec_new.json packages/vaex-ml/vaex/ml/spec.json
# - name: Test with pytest (vaex-enterprise)
# if: ${{ (github.event.pull_request.head.repo.full_name == 'vaexio/vaex') && (matrix.os == 'ubuntu-latest') }}
# run: |
# py.test vaex-enterprise/tests --timeout=1000
- name: Test notebooks
if: matrix.os != 'windows-latest'
run: ./ci/05-run-notebooks.sh
- name: Authenticate Google Cloud Platform
if: ${{ (github.event.pull_request.head.repo.full_name == 'vaexio/vaex') && !((matrix.os == 'windows-latest')) }}
uses: google-github-actions/setup-gcloud@v0
with:
project_id: ${{ secrets.GCP_PROJECT_ID_VAEX }}
service_account_key: ${{ secrets.GCP_SA_KEY_VAEX }}
export_default_credentials: true
- name: Test vaex-contrib
# do not run in a PR from someone else, skip windows
if: ${{ (github.event.pull_request.head.repo.full_name == 'vaexio/vaex') && (matrix.os != 'windows-latest') }}
env:
PROJECT_ID: ${{ secrets.GCP_PROJECT_ID_VAEX }}
run: ./ci/06-run-contrib-tests.sh
- name: Test comand line
run: |
vaex convert ~/.vaex/data/helmi-dezeeuw-2000-FeH-v2-10percent.hdf5 test.parquet
VAEX_PROGRESS_TYPE=rich vaex convert ~/.vaex/data/helmi-dezeeuw-2000-FeH-v2-10percent.hdf5 test.parquet
vaex settings yaml
vaex settings md
- name: Test server
if: matrix.os != 'windows-latest'
run: |
vaex server --add-example --port 9999 &
- name: Wait for Vaex server
if: matrix.os != 'windows-latest'
uses: ifaxity/wait-on-action@v1
with:
resource: http-get://localhost:9999/hello
timeout: 5000
- name: Use the Vaex server
if: matrix.os != 'windows-latest'
run: |
python -c "import vaex; df = vaex.open('ws://localhost:9999/example'); df.x.sum()"
curl -i http://localhost:9999/histogram/example/x