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vaqm2/README.md
  • 👋 Hi, I’m Vivek Appadurai (@vaqm2)
  • 👀 I’m interested in bioinformatics libraries, packages, workflows and alternative models for genome wide associations studies.
  • 🌱 I’m currently employed as a postdoc in statistical genetics with applications towards pscyhiatric genetics, risk scores and health metrics research.
  • 📫 appadurai.vivek@gmail.com

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  1. custom_gwas custom_gwas Public

    Python Code using CyVCF2 to run custom GWAS models on imputed VCF files

    Python 2

  2. BioPsyk/ibp_pgs_pipelines BioPsyk/ibp_pgs_pipelines Public

    Pipelines to calculate polygenic scores for data at Institute of Biological Psychiatry

    Nextflow

  3. CodeEval CodeEval Public

    Solved CodeEval challenges

    C++

  4. impute_paper impute_paper Public

    Code used for the paper, "Legacy data, whole genome imputation, and the analysis of Psychiatric traits: Lessons from the iPSYCH case-cohort study"

    Perl

  5. Util Util Public

    Utility scripts and other one time use code

    Perl