.travis.yml

dist: xenial
group: edge
os:
    - linux
    # travis does not support python on osx yet (https://github.com/travis-ci/travis-ci/issues/4729)
language: python
python:
    - "3.7"
    - "3.8"
    - "3.9"

addons:
    apt:
        update: true
        packages:
            - flawfinder
            - squashfs-tools
            - uuid-dev
            - libuuid1
            - libssl-dev
            - libssl1.0.0
            - libarchive-dev
            - libgpgme11-dev
            - libseccomp-dev
            - git
            - build-essential
            - libtool
            - autotools-dev
            - automake
            - autoconf
            - uuid-dev
            - libmagickwand-dev
            - libmagickcore-extra
            - graphviz
            - octave
            - ruby-full
            - r-base
            - r-base-dev
            - pandoc

before_install:
    # singularity
    - sudo sed -i -e 's/^Defaults\tsecure_path.*$//' /etc/sudoers
    - pip install sregistry[all]

    # this is to allow sos R_Library target to operate and pass test as well
    - sudo chmod -R 777 /usr/local/lib/R/site-library
    - R -e 'install.packages(c("digest", "rlang"), repos = "http://cran.us.r-project.org")'
    - R -e 'install.packages(c("rmarkdown"), repos = "http://cran.us.r-project.org")'
    - pip install pandas numpy
    # add docker
    - pip install docker pyyaml psutil tqdm fasteners pygments networkx pydot pydotplus graphviz imageio pillow entrypoints jupyter coverage codacy-coverage
    - pip install pytest pytest-cov python-coveralls -U
    - olddir=`pwd` && cd /tmp && wget https://github.com/singularityware/singularity/archive/2.6.0.tar.gz && tar zxf 2.6.0.tar.gz && cd singularity-2.6.0 && ./autogen.sh && ./configure --prefix=/usr/local && make && sudo make install && cd $olddir

sudo: required
services:
    - docker
install:
    - pip install .
    - pip install sos-pbs
before_script:
    - cd test
    - sh build_test_docker.sh
script:
    # - pytest -v --cov sos --cov-config ../.coveragerc --cov-report=xml
    - sh run_tests.sh

after_success:
    - coverage combine;
    - coveralls

notifications:
    email:
        recipients:
            - ben.bob@gmail.com
        on_success: never
        on_failure: always