| title | description | published | date | tags | editor | dateCreated |
|---|---|---|---|---|---|---|
CRISPRCas++ |
A web tool to identify clustered regularly interspaced short palindromic repeats. |
true |
2020-09-11 14:55:50 UTC |
metagenomes, annotation tools, archaea, bacteria, tool, sequence analysis, database, homology, 2017, 2007, localization |
markdown |
2020-05-26 17:24:18 UTC |
The CRISPRCasFinder program enables the easy detection of CRISPRs and cas genes in user-submitted sequence data. This is an update of the CRISPRFinder program with improved specificity and indication on the CRISPR orientation. MacSyFinder is used to identify cas genes, the CRISPR-Cas type and subtype.
CRISPRCasMeta is a workflow dedicated to the research and annotation of CRISPR/Cas structures in metagenomic data. It uses CRT (MinCED) and MetaFinder (a metagenomic version of CRISPRCasFinder 4.2.17) to perform its analysis.
CRISPRCasdb is a database of strains precomputed with CRISPRCasFinder. {.is-info}
- CRISPR-Cas++ Main Page {.links-list}
- CRISPRCasFinder Submit your own genome
- CRISPRCasFinder Viewer
- CRISPRCasMeta For metagenomes {.links-list}
- CRISPRCasdb Database of strains
- CRISPRCasdb - taxo Database of strains sorted by taxonomy
- CRISPRCasdb - BLAST Database of strains access by BLAST {.links-list}
- Stand alone version available.
- Tool to view previous results (Viewer).
- Allows sequences up to 50 Mo otherwise download standalone program.
- Downloadable database.
- Three way to access database: list, taxonomy, BLAST.
- Possibility to search in CRISPRCasdb from the tool.
- Input sequence in FASTA format.
- Lots of setting to tune your search.
- Enter your e-mail address to get notified of the result.
- Results easy to read and interpret.
- Same for metagenomes.
- The several way to access the database makes it easy to go through it.
Help for CRISPRCasFinder on the tool page under "Page information". {.is-success}
- Help section CRIPRCasdb Help {.links-list}
- Grissa, I., Vergnaud, G., & Pourcel, C. (2007). CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic acids research, 35(suppl_2), W52-W57.
- Couvin D., Bernheim A., Toffano-Nioche C., Touchon M., Michalik J., Néron B., Rocha E.P.C., Vergnaud G., Gautheret D., Pourcel C., CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins, Nucleic Acids Research, Volume 46, Issue W1, 2 July 2018, Pages W246–W251, https://doi.org/10.1093/nar/gky425 {.grid-list}