| title | description | published | date | tags |
|---|---|---|---|---|
FUNGIpath |
FUNGIpath is a web service dedicated to the exploration of fungal metabolism. |
true |
2020-04-29 20:55:52 UTC |
annotation, genomics, genomes, tool, fungi, eukaryotes, metabolism, protein, orthology, protein family, proteomics, metabolic pathways |
FUNGIpath predicts groups of orthologous proteins in fungal genomes with the MaRiO pipeline. Orthology groups are annotated with the FUNGIpath annotation pipeline based on Swiss-Prot and MetaCyc data. Functional annotations of groups allows an easy comparison of the metabolism within species represented in the associated database. There are 165 species for which data are currently available in FUNGIpath (v.4.0 - May 2014). {.is-info}
- FUNGIpath Main Page
- MaRiO Pipeline Main Page {.links-list}
Pathways (KEGG and MetaCyc) can be explored to determine the presence/absense of each pathway enzyme among the database genomes as well as percent coverage by phylum, subphylum and class.
Users can search for orthologous proteins and upload fasta-formatted fungal genomes for annotation.
Users can tailor searches to allow, include, or exclude select species genomes.
- You can find the annotation pipeline and additional informations in the publication: FUNGIpath: a tool to assess fungal metabolic pathways predicted by orthology. Grossetete S, Labedan B, Lespinet O. BMC Genomics 2010;11:81.
- The MaRiO pipeline is described in the article: A meta-approach for improving the prediction and the functional annotation of ortholog groups. Pereira C, Denise A, Lespinet O (2014). BMC Genomics 2014;15:S16. {.grid-list}