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---
title: autoMLST: Automated Multi-Locus Species Tree
description: Upload sequence(s) for automatic generation of species phylogeny with reference organisms.
published: true
date: 2020-08-03T16:10:51.285Z
tags: bacteria, tool, phylogeny, evolution
editor: markdown
---
This server utilizes Multi-Locus Sequence Analysis (MLSA) to produce high-resolution species trees; this does not preform multi-locus sequence typing (MLST), a related classification method. The resulting phylogenetic tree also includes helpful annotations, such as species clade designations and secondary metabolite counts to aid natural product prospecting.
Distinct from currently available web-interfaces, autoMLST can automate selection of reference genomes and out-group organisms based on one or more query genomes. This enables a wide range of researchers to perform rigorous phylogenetic analyses more rapidly compared to manual MLSA workflows. {.is-info}
- autoMLST Main Page {.links-list}
- Can provide genome or NCBI Accession number
- Can provide email to receive results
- Unsure if working, submitted job never received completed email and job ID was invalid on site
- Easy to toggle tree results
- Can download Newick file and further manipulate in iTOL
- Help Help/About {.links-list}
- Alanjary, M., Steinke, K., & Ziemert, N. (2019). AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential. Nucleic acids research, 47(W1), W276-W282. {.grid-list}