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821 Open 1,245 Closed
821 Open 1,245 Closed
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Issues list

VG Paths --Metadata Warning: Duplicate Paths Exist in Graph
#4440 opened Nov 8, 2024 by AbdelF6
does vg giraffe support the third mapping of precise long reads (PacBio HiFi, ONT) to graph-based pan-genomes?
#4437 opened Nov 6, 2024 by ChenDepp
Release vg v1.62.0
#4435 opened Nov 4, 2024 by adamnovak
28 tasks
v1.62.0
VG STATS: 2000 Properly Paired Inquiry
#4434 opened Nov 4, 2024 by AbdelF6
5
Demote Giraffe warnings that users can't fix to notices
#4431 opened Oct 29, 2024 by adamnovak
Extracting specific path IDs for making subset gfa file
#4423 opened Oct 23, 2024 by OZTaekOppa
1
distance index slow to compute snarls
#4420 opened Oct 21, 2024 by glennhickey
@xchang1
How to Generate a VCF File Showing Differences Between HG002 Haplotypes from the HPRC Pangenome
#4419 opened Oct 17, 2024 by xuxingyubio
4
Problem with vg inject in version 1.59
#4415 opened Oct 8, 2024 by NMarthe
Chromosome path not found in graph or haplotypes index
#4411 opened Sep 26, 2024 by zwh82
9
Release vg v1.61.0
#4409 opened Sep 23, 2024 by adamnovak
24 of 28 tasks
v1.61.0
Memory limit exceeded during vg autoindex for GCSA/LCP indexing
#4404 opened Sep 20, 2024 by HuangXZhuo
15
Error When Running "vg gbwt --gbz-format -g hprc-v1.0-mc-grch38.gfa.gz -G hprc-v1.0-mc-grch38.gfa"
#4401 opened Sep 18, 2024 by AbdelF6
1
Update vg rna to project reasonably onto haplotypes containing CNVs
#4399 opened Sep 13, 2024 by jeizenga
Hello, I have a question about vg map.
#4398 opened Sep 13, 2024 by pioneer-pi
1
confused about the number of genome and gff files being provided to vg autoindex while mapping RNA data
#4393 opened Sep 10, 2024 by QianghuiZhu
3
Different BAM alignments when using an Ubuntu 20.04 base image versus a 22.04 base image
#4391 opened Sep 6, 2024 by dpuleri
vg autoindex vg giraffe pggb gfa
#4387 opened Sep 3, 2024 by hgz2021
1
Negative or "*" end-position for named-coordinates gaf with giraffe
#4386 opened Sep 2, 2024 by ASLeonard
1
vg pack error
#4384 opened Aug 27, 2024 by JONGHOLEE-myrrh
Get input file error
#4382 opened Aug 22, 2024 by OZTaekOppa
5
Throw an error "error: trying to access a snarl tree node of the wrong type" in haplotypes
#4381 opened Aug 21, 2024 by wjwei-handsome
11
vg convert failes while converting gbz to xg with signal 6 error
#4372 opened Aug 10, 2024 by leleory
8
Any option like BWA MEM '-C'?
#4370 opened Aug 8, 2024 by alshai
1
Giraffe needs to better deal with systems where multiple processes opening the distance index causes slowdowns
#4369 opened Aug 8, 2024 by adamnovak
2 tasks
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