- Added a .ipynb notebook to calculate the final result for the paper only. It is in
1-PRD_Figures
and it's calledplot_final_yield.ipynb
. Note that it needs two large data files from the OSF link:mcmc_Sor_128walk_50kstep_SNorm_v3.pkl
andmcmc_Sor_128walk_50kstep_SNorm_v4.pkl
Reorganized the repository:
- The
analysis_notebooks
directory has been removed.- Any code kept from this directory has been moved to
0-Analysis/processing
.
- Any code kept from this directory has been moved to
- Python scripts with duplicates stored in multiple places are now only stored in the top-level
python
directory. - Removed the directory
1-PRL_Figures
and replaced it with1-PRD_Figures
.- Added notebooks for figures in PRD draft that were not in PRL draft.
- Renumbered figure notebooks to match the new paper's order. Documentation:
- Updated the README to match reorganization.
- Added instructions for retrieving large data files from OSF.io to the README.
- Added
CONTRIBUTING.md
.
Other Changes:
- Created a script
retrieve_data.sh
for easier retrieval of necessary data files from OSF.io. - Pruned the environment in
nrSiCap.yml
to speed up environment creation time. - Implemented testing through Travis-CI.
- (hotfix) To update top name in README.md file
- First release with very basic code working and going public.