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Added appropriate exception catching for SBML errors when exproting to SEDML. #937

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Added appropriate exception catching for SBML errors when exproting to SEDML. #937

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Commits on Oct 2, 2023

  1. Added appropriate exception catching for SBML errors when exproting t… 

    …o SEDML.
    @CodeByDrescher @jcschaff
    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  2. Patched unnecessary throw statement

    @CodeByDrescher @jcschaff
    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  3. Changed Exception to SEDMLExportException

    @CodeByDrescher @jcschaff
    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  4. Added clearer exception catching, and small tweaks

    @CodeByDrescher @jcschaff
    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  5. Adding missing exception infrastructure

    @CodeByDrescher @jcschaff
    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  6. Added new exception for non-error raising failures

    @CodeByDrescher @jcschaff
    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  7. Cleaning commit

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    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  8. Added handling for mapping exception

    @CodeByDrescher @jcschaff
    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  9. expanded unsupported sbml exceptions

    @CodeByDrescher @jcschaff
    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  10. Added cbit's XMLParseException exception handling

    @CodeByDrescher @jcschaff
    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  11. Added NumberFormatException exception handling

    @CodeByDrescher @jcschaff
    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  12. Testing state in GitHub Action

    @CodeByDrescher @jcschaff
    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  13. Fixed bug with OmexPythonUtils

    @CodeByDrescher @jcschaff
    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  14. Added system property to MathOverrideRoundTipTest

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    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  15. Testing using install dir as reference

    @CodeByDrescher @jcschaff
    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  16. Second attempt at a fix

    @CodeByDrescher @jcschaff
    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  17. Used canonical file to fix pathing

    @CodeByDrescher @jcschaff
    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  18. Cleaned up Batch mode, still a bug with Export calls

    @CodeByDrescher @jcschaff
    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  19. Reverted some changes to get working result

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    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  20. Added more needed property updates

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    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  21. removed debug session

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    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  22. Needing to check debug again

    @CodeByDrescher @jcschaff
    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  23. Removed tmate check, and added code to restore joblob.txt

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    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  24. Fixed Workflow to not create already existing directory, and to print… 

    … jobLog.txt
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    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  25. Fixed path to processed export results

    @CodeByDrescher @jcschaff
    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  26. Added new test and correlated helper classes; need to test prototype … 

    …and confirm everything's working.
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    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  27. Fleshed out new tests, and changed github action to use test

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    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  28. Fixed mkdirs

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    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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  29. Removed skipping tests

    @CodeByDrescher @jcschaff
    CodeByDrescher authored and jcschaff committed Oct 2, 2023
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